NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTAATCACTAACTATGATGATTGAGTAATATTGTGACAGTGG
GTTCTTCTCTAAAATTCCTGACCTCACTGCCTGTGAGTAGTTGTCTGGTA
TTCCAGGAGCAGGCATGATTTTCCACCTGTTGAGGGGATCTTAAATCTAA
TTGAACAAGTATTTTTCCCTGTTAAGATACAAATGTCACTATAACAACCG
TAGATTATTTTACTATCCTGAATATCACTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTTTTTTTAAAAAATATTTTTATTTATAATAAT
TTAAAATTAAACAAAAATCAAAAAATATCATTATTTTTGTTTTTTAATTT
ATCTTTATTTTTTTCCCCCCCTTCCCCTTTTTCCCTTCTATTTCCCCCCC
ATTAATTATATTTTCTTACCACCTATCTTTTTATTCCAATATCCTTTCCT
CTTTTTCCCATTTTTCTCTCACTTAACATTAATTAATTCAACAACACCAA
AATCACCACTAATTTTTTCACTCTCTTTCTCCCTTATTCCTTCTCTTACC
TTTCTTCCTCTTTCCTCCTCTTTATTTTTATTCCACTCCACCATATACAA
AAACACTATCTACAACTCTAATTCTTATCTCTACGTGATCAATCCCCTCT
ATTCCTCTTAATTCGCCTAACTCATTGT

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGTCAAGCATGCAGAAAAAGAACA
GACCATAAAAATTTATTATAGTGGTTTTCTCATTAATGACTCTCTTTTAA
ATCATAAAAATTGTATAAACACAAATGTTTAAATGTGAAGAAATGGATCC
TAATAAAATTGATTTAAAATATTATAGTAATGCTATTTTTGATACCAGCT
TATGCCTTAAGGAAAGGCAGAATAAACAGAAAAGTCAGGAATGAATCTTT
CATGGAAAATACTTCACAGCCTATAATTGCTAGCTATTTCGCAAATCTAT
ATTTCAAAAAATTGTACACAATATCACTATATTCAACCTAGCTCTGATGA
AACAAACAGAGAAAGTGGGTTTTAGACCTTTTGAGATAGAAATAATCTTA
TTCACATGTACCTACCAACAAGATGTTTCCATTCTGAGTTCGGTATGACT
GAAAGGATTTTTGGCTAGTCTGGACAGGAAGGAGAAGTAAAAACTAATTC
ATTAAATAAGAATTTTACAGTAAAAGCATCACAGCTCATATATCCATACC
TATAAAACAATGGATGAAGAATAGCACGGGAAATAACCCTTTACCCAAGA
AATATATTGACACATTTGTATTGTAACCAAGCTTACTT

Query= MSMg01no080_o03.g1 MSMg01no080_o03.g1 CHROMAT_FILE:
MSMg01no080_o03.g1 PHD_FILE: MSMg01no080_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:55 2005
         (535 letters)



>mm_chr17_60991241_60992176
          Length = 936

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%), Gaps = 1/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtcaagcatgcagaaaaagaa-cagaccataaaaatttattatagtggttttctcat 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 736 tcagtcaagcatgcagaaaaagaagcagaccataaaaatttattatagtggttttctcat 677

                                                                       
Query: 60  taatgactctcttttaaatcataaaaattgtataaacacaaatgtttaaatgtgaagaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taatgactctcttttaaatcataaaaattgtataaacacaaatgtttaaatgtgaagaaa 617

                                                                       
Query: 120 tggatcctaataaaattgatttaaaatattatagtaatgctatttttgataccagcttat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tggatcctaataaaattgatttaaaatattatagtaatgctatttttgataccagcttat 557

                                                                       
Query: 180 gccttaaggaaaggcagaataaacagaaaagtcaggaatgaatctttcatggaaaatact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccttaaggaaaggcagaataaacagaaaagtcaggaatgaatctttcatggaaaatact 497

                                                                       
Query: 240 tcacagcctataattgctagctatttcgcaaatctatatttcaaaaaattgtacacaata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcacagcctataattgctagctatttcgcaaatctatatttcaaaaaattgtacacaata 437

                                                                       
Query: 300 tcactatattcaacctagctctgatgaaacaaacagagaaagtgggttttagaccttttg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcactatattcaacctagctctgatgaaacaaacagagaaagtgggttttagaccttttg 377

                                                                       
Query: 360 agatagaaataatcttattcacatgtacctaccaacaagatgtttccattctgagttcgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agatagaaataatcttattcacatgtacctaccaacaagatgtttccattctgagttcgg 317

                                                                       
Query: 420 tatgactgaaaggatttttggctagtctggacaggaaggagaagtaaaaactaattcatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatgactgaaaggatttttggctagtctggacaggaaggagaagtaaaaactaattcatt 257

                                                                   
Query: 480 aaataagaattttacagtaaaagcatcacagctcatatatccatacctataaaaca 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaataagaattttacagtaaaagcatcacagctcatatatccatacctataaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space:   486150
Effective search space used:   486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)