BAC Information

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BAC

Clone NameMSMg01-081I20
Chromosome17 (Build37)
Map Location 24,304,319 - 24,464,362
singlet/doubletdoublet
Overlap geneAtp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17
Upstream geneZfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2
Downstream geneAbca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I20.T7 (MSMg01no081_i20.b1)MSMg01-081I20.TJ (MSMg01no081_i20.g1)
ACCAG302128AG302129
length715715
length of high quality
(start - end)
189 (117 - 305)310 (64 - 373)
definitionCHROMAT_FILE: MSMg01no081_i20.b1 PHD_FILE: MSMg01no081_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005CHROMAT_FILE: MSMg01no081_i20.g1 PHD_FILE: MSMg01no081_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,304,319 - 24,304,507)(24,464,053 - 24,464,362)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCTCCCA
GTATCCCATCAGAGGCTGGAAGGATTTCTTTACGTAATGGGAGGACAAGA
CATTGTACAGAATACTCATGCCTAATAGGAAAAAAAAGAAGTCAGAAGGT
GATTCAGCTGGACAAGTAAGAGGCTAACCCCCACAGGACTGTGAGACGCT
GGTGTGAAGGATCAGACAAGGAAAGCCGAGGTCAGCTTGCAATAGTGCAG
ACACACCTGTTGGCCAGCTTTAGCACATGTAAGGTCTTCATACAAGAGAT
CCTAGAAGCTGGGTGCTTAAAAAGAACTGTGGAGAAATTTGGAGTTGCAG
GATCCATCGCGACCACCATAGCATGACACCCACATGGTCAGGGATATATT
GCTGTGTTCCCTGAGACTCCTCCACTATCTGGGAAACAGTATGGACTCAA
GAAAGATTTGCTGGATTAATTTATGAATGAGTGACAAATATTAATCATAG
GTGGCTAAAACAGGGGAACCTATGGACACCTTATTCTGGGTGTACCGAGT
ATAACAACATGCTTGGCAGCTTTCTCTAATGAGACCCGAAGTGTCCCGAG
AATAGCCGCGTTGTTATATCGACCAAGGACAAGTCCATTCCTTTTCTTCC
TTCTCTTATGACCTCTTACCCTTATGCGGTGTTTATTGCTTGTTTCCCTC
CCCCCTTCTCTATTG
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCTACAGACCAGACTGATCTTGAATTTATGTTAAC
CCTCAACTTTATCTCCAAAATGCTGGGGTTACCGCCTTGTACTGCCAAAC
CTAATCTAGTATTTAGGGACTTGAGGCTCACAAATTACTCTCCGCAGGCT
TGAAAATATAAATTTCACACTGTACAATAGTTGAAAATACTTGCTAACAT
TATTTTACTTCAGTGTCACCATGGTTTTGTTTTTGTTTTTTTTTTGTTTG
TTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGG
CTGTCCTGCAACTCACTCTGTAGTCCAGGCTGGCCTCGAACTCAGAAATC
TATCTGACTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACC
GCCCCAACACCATGGTTTTTTTTATGGTGTCAATAGAGCTTGATACTAAC
ATTTGCCTTGGGAACCTTTACCTTCCCACTATTTGGATGCTTACAAACTT
ACCTCCTGTTGTATCATTGCGGTGTATTGAATTGTATAATTCCCAGACCA
ACCTGGACTATATTTCAGACACATTAAATAACCTGAATGTTCTCCTACCT
AATATATTTTTTCCCCCCTTAACTTTTGTAATTAACCGTCTTACCGTAAT
TGCCACCAATGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i20.b1 MSMg01no081_i20.b1 CHROMAT_FILE:
MSMg01no081_i20.b1 PHD_FILE: MSMg01no081_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
         (189 letters)



>mm_chr17_24304119_24304707
          Length = 589

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcctaataggaaaaaaaagaagtcagaaggtgattcagctggacaagtaagaggcta 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcctaaaaggaaaaaaaagaagtcagaaggtgattcagctggacaagtaagaggcta 260

                                                                       
Query: 61  acccccacaggactgtgagacgctggtgtgaaggatcagacaaggaaagccgaggtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccccacaggactgtgagacgctggtgtgaaggatcagacaaggaaagccgaggtcagc 320

                                                                       
Query: 121 ttgcaatagtgcagacacacctgttggccagctttagcacatgtaaggtcttcatacaag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttgcaatagtgcagacacacctgttggccagctttagcacatgcaaggtcttcatacaag 380

                    
Query: 181 agatcctag 189
           |||||||||
Sbjct: 381 agatcctag 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no081_i20.g1 MSMg01no081_i20.g1 CHROMAT_FILE:
MSMg01no081_i20.g1 PHD_FILE: MSMg01no081_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
         (310 letters)



>mm_chr17_24463952_24464661
          Length = 710

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctacagaccagactgatcttgaatttatgttaaccctcaactttatctccaaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 actctacagaccagactgatcttgaatttatgttaaccctcaactttatctccaaaatgc 352

                                                                       
Query: 61  tggggttaccgccttgtactgccaaacctaatctagtatttagggacttgaggctcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tggggttaccgccttgtactgccaaacctaatctagtatttagggacttgaggctcacaa 292

                                                                       
Query: 121 attactctccgcaggcttgaaaatataaatttcacactgtacaatagttgaaaatacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attactctccgcaggcttgaaaatataaatttcacactgtacaatagttgaaaatacttg 232

                                                                       
Query: 181 ctaacattattttacttcagtgtcaccatggttttgtttttgttttttttttgtttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctaacattattttacttcagtgtcaccatggttttgtttttgttttttttttgtttgttt 172

                                                                       
Query: 241 gtttgtttgtttgttttttgagacagggtttctctgtatagccctggctgtcctgcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 171 gtttgtttgtttgttttttgagacagggtttctctgtatagccctggctgtcctggaact 112

                     
Query: 301 cactctgtag 310
           ||||||||||
Sbjct: 111 cactctgtag 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)