BAC Information

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BAC

Clone NameMSMg01-082I17
Chromosome17 (Build37)
Map Location 91,525,775 - 91,526,349
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872
Downstream geneLOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082I17.T7 (MSMg01no082_i17.b1)MSMg01-082I17.TJ (MSMg01no082_i17.g1)
ACCAG302887AG302888
length679678
length of high quality
(start - end)
481 (40 - 520)576 (67 - 642)
definitionCHROMAT_FILE: MSMg01no082_i17.b1 PHD_FILE: MSMg01no082_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:02 2005CHROMAT_FILE: MSMg01no082_i17.g1 PHD_FILE: MSMg01no082_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGGATCCGCGGAAT
TCATCTATCTCAAGACCCAGCTATACCACTCCTGAGCATATACTCAAAGG
ATGTTCCATTCTGCCACAAGGACACTTGCTCAACTATGTAGAGCATAATG
CATAATAATCACAAACTGGAAACCACCTAGATGTCCCTCAACTGAAGAAT
AATAAAGAAAACATGGTACATTCACATAGTAGACTATTACTCAGCTGTTA
ATAAAATGGTACCATGAAATTCAGTAAATGGATGGAACTAGAAAAAAAAT
CTTCCTGAGTGAGGAAACTCAGACACAGAAAGACAACCATAATATGTACT
GATTTAAAAGTGGACATTAGCTGTTGAGTAAAGGATAATCATTCTCTGGA
TTCATAAACCTAGAGAGAGGTGGGGGGGGGAGAGAACCTGCAAGAATCTC
CTTGAGAATTAGAAATAGGATAGATTTTGAAGGTGGACTTGAGGACATGT
GGGGATAGAAACAGAAGGGGTCAGGCACAGGTAGAAATGGAAGGAGAGAG
TACTGAGAGGAAAATCTGGAACTGGGGTCATTTGTGGAATGATGTGGAAT
CTCAATGCAATGGAATCTCCTTACAAGTGTGACACTAACAAGATCGCCTT
CTAAGGGAGCATCCAGAACCAAAAACTGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAACAAAAGGTTTTACTGTAGACCTTTTTCATTC
ATGCTGTTGATTGCTAAATGTAATAGTCTGATCTAACACTGAATAAATGT
GTCTTTTTTTTTTACAAAAACAAAACACAACTTTTTGAATTATAGAAAAT
ATTCTACTCCTAAAACTATTGATACATGCAAAATTTCTCCATGGAAAATA
TTCATAACCTTTTCTTCTGCCTTTTGGAAAGGACAATGTATGTTCTCACA
GAAAGCCACCTTCCTTCAGAAGCACAAAGTAAGAGGCAGTAGATATGTCA
GACCTGATTTTAATATTACACAATTCATACACACAATGAACTATCACATT
ACAATGAAATATGTACAATTACTGATTTTTGTACTACCAAAAATAAATTT
GTTAAAAATAAAGAAAAATTAAAAAAATAATATTAATTAATGAAAGTTGA
AAAGTATTATGTCCTTAAATGTAAATACTAAAGTTCAGATTCTAACAAAG
AAGTCCATTTATGCAATTTGAGTCTAAAAAGGATTCCTCGGGAAACCAAA
TACTAAACATAGAACATTTGGTAAGTCGATTTTCATTAAAATTAAGATAA
TATTTTATTTAAAAGACAACATGTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_i17.g1 MSMg01no082_i17.g1 CHROMAT_FILE:
MSMg01no082_i17.g1 PHD_FILE: MSMg01no082_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:02 2005
         (576 letters)



>mm_chr17_91525575_91526549
          Length = 975

 Score = 1098 bits (568), Expect = 0.0
 Identities = 574/576 (99%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacaaaaggttttactgtagacctttttcattcatgctgttgattgctaaatgtaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacaaaaggttttactgtagacctttttcattcatgctgttgattgctaaatgtaatag 260

                                                                       
Query: 61  tctgatctaacactgaataaatgtgtcttttttttttacaaaaacaaaacacaacttttt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tctgatctaacactgaataaatgtgtcttttttttt-acaaaaacaaaacacaacttttt 319

                                                                       
Query: 121 gaattatagaaaatattctactcctaaaactattgatacatgcaaaatttctccatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaattatagaaaatattctactcctaaaactattgatacatgcaaaatttctccatggaa 379

                                                                       
Query: 181 aatattcataaccttttcttctgccttttggaaaggacaatgtatgttctcacagaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatattcataaccttttcttctgccttttggaaaggacaatgtatgttctcacagaaagc 439

                                                                       
Query: 241 caccttccttcagaagcacaaagtaagaggcagtagatatgtcagacctgattttaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caccttccttcagaagcacaaagtaagaggcagtagatatgtcagacctgattttaatat 499

                                                                       
Query: 301 tacacaattcatacacacaatgaactatcacattacaatgaaatatgtacaattactgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacacaattcatacacacaatgaactatcacattacaatgaaatatgtacaattactgat 559

                                                                       
Query: 361 ttttgtactaccaaaaataaatttgttaaaaataaagaaaaattaaaaaaataatattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttgtactaccaaaaataaatttgttaaaaataaagaaaaattaaaaaaataatattaa 619

                                                                       
Query: 421 ttaatgaaagttgaaaagtattatgtccttaaatgtaaatactaaagttcagattctaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaatgaaagttgaaaagtattatgtccttaaatgtaaatactaaagttcagattctaac 679

                                                                       
Query: 481 aaagaagtccatttatgcaatttgagtctaaaaaggattcctcgggaaaccaaatactaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaagaagtccatttatgcaatttgagtctaaaaaggattcctcgggaaaccaaatactaa 739

                                               
Query: 541 acatagaacatttggtaagtcgattttcattaaaat 576
           |||||||||||||||||||||||| |||||||||||
Sbjct: 740 acatagaacatttggtaagtcgatattcattaaaat 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space:   546190
Effective search space used:   546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)