BAC Information

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BAC

Clone NameMSMg01-082K06
Chromosome17 (Build37)
Map Location 54,836,673 - 54,836,843
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082K06.T7 (MSMg01no082_k06.b1)MSMg01-082K06.TJ (MSMg01no082_k06.g1)
ACCAG302961AG302962
length703700
length of high quality
(start - end)
171 (154 - 324)174 (78 - 251)
definitionCHROMAT_FILE: MSMg01no082_k06.b1 PHD_FILE: MSMg01no082_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:09 2005CHROMAT_FILE: MSMg01no082_k06.g1 PHD_FILE: MSMg01no082_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAAGCCGCGGA
ATTCTTGAGATCTCCCGAGCAGATGGCAAAGCCAAGGAGGAGGACAACAA
GATCATTAACTCCTTGCAGCAAGACAGAGCCCTAGTAGGAAATCCAGTAT
GACAGGCTTCAGTTGATCACTGGTTGGGCCATTATAATCTCATCCTCAAT
ATCTATAGTGTTTACAGTGAAGGCAGGATCTGAATGCAGTGTAAATGTCC
CCATTTAGATGTTCAAGCTCTAGGTGGGAGGAAAAGAAGCCATGCTTCAG
CAGTGCTCAGTTTGAGCTCCTGACTTATGTCCAGGGCTGTGAGCCCAGCG
TGCCAGCTTTTATAAAGGCCGTCAGGTCTGTAGTGTAAAGTTGGTTTAAG
ATAACCTGTGTCTCCCCCAGAAGCCAGAGAGTTGGGCCACTTCTGAGTTG
GTGGTCTGCGGCACCCCCAAATTTTGTGCAGTTTTGGATCTCCCAGGCTT
AACTTTTTATCCACTTAGCAATCCTAGGCGCGCTTTCTGACGCACATCTT
TTCTGACTATCCCCGAGTGTTCCATTCCAGTGAACTAATAAGCTATTAAT
GCTAACACTATTTAGCATAGGATGGTGCTCTCATTGCTACTAACATACTT
TTGAATGTTCTTCTGTGAGTTTCACAGTATGCTTCCTTCTTGTTATAACA
CTT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGTAGATCTTATGAGATTCCAGAG
TATGCAAATGAGTGGGTTTCAGTACAGGGTGGATCTGATGTTAAGGTATT
ATCCTCCAGTTAGTTCTTGATACATCAATAATGATGCCAGGAGCCATTTG
CTGGTTGGAAGGAAAGAGGCAAGACTACTGATTCCCTGCATGCAGGCTAA
GAGATGCAGGATAAGAAAGGGAGAATTTTGCCATGGTATGGAGGGAAAAA
ATGTAACCAGCTATGTGAAATCTCATGTGGCACAACCATATGCAGCTTCC
CCAGGTGTTAGATTAAAAAGACATCTAATAAGAGGGAGTTTTCAGTTGCT
AAGACACTAAGTTAAAGGCAGATTAATAGTTGCTAAGCTAATGGTATTGT
AAAGGTCACACTAGGCACAGAAGATTATAAGCACCCAGCAATTGAGCCAA
TAAGGCAGGATGAAACTCATGTGTGTATGTGTTTTTCATCTGCAGTTCCA
ATATTCTCTGGGTACGGACTAGTAGCACAGTTTGCCTGGAGCTTACTGCA
TACTAGCAAAAACTATATGCTACAGGTTTTTATGTCTATATCCACTTCTT
GTGAATTTTCTAGAGCTCTTTTCCTCATTTGTGTTGTTTGTCCATTTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_k06.b1 MSMg01no082_k06.b1 CHROMAT_FILE:
MSMg01no082_k06.b1 PHD_FILE: MSMg01no082_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:09 2005
         (171 letters)



>mm_chr17_54836473_54837043
          Length = 571

 Score =  292 bits (151), Expect = 7e-84
 Identities = 166/171 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttcagttgatcactggttgggccattataatctcatcctcaatatctatagtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggcttcagttgatcactggttgggccattataatctcatcctcaatatctatagtgttt 312

                                                                       
Query: 61  acagtgaaggcaggatctgaatgcagtgtaaatgtccccatttagatgttcaagctctag 120
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 311 acagtgaaggtaggatctgaatgcaatgtaaatgtccccatttagatgttcaagctctag 252

                                                              
Query: 121 gtgggaggaaaagaagccatgcttcagcagtgctcagtttgagctcctgac 171
           |||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 251 gtgggaggaaaagaagccattcttcagtaatgctcagtttgagctcctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)