Query= MSMg01no083_h23.b1 MSMg01no083_h23.b1 CHROMAT_FILE:
MSMg01no083_h23.b1 PHD_FILE: MSMg01no083_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:14 2005
(578 letters)
>mm_chr17_45765686_45766670
Length = 985
Score = 1025 bits (530), Expect = 0.0
Identities = 565/580 (97%), Gaps = 7/580 (1%)
Strand = Plus / Minus
Query: 6 gaattcctgggtccc-accatcaggcttgagtggcaggccatcttcctggtcctcgctct 64
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaatccctgggtcccaaccatcaggcttgagtggcaggccatcttcctggtcctcgctct 726
Query: 65 tccttctcttatagagccagtaataatgccaccataggaccttcctcccgtgactcagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tccttctcttatagagccagtaataatgccaccataggaccttcctcccgtgactcagcc 666
Query: 125 tcctagataaggcttcccttagattaaaccacttcccttagattaaaccttcgttccaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcctagataaggcttcccttagattaaaccacttcccttagattaaaccttcgttccaca 606
Query: 185 gagcaatcaagatacttcctgcctctgtgtacagcttcctagggaccggtggtttctgtc 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagcaatcaggatacttcctgcctctgtgtacagcttcctagggaccggtggtttctgtc 546
Query: 245 aaattctgcaaattcccccaaattctggcagttagacaaaagccaacataggtcaggaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaattctgcaaattcccccaaattctggcagttagacaaaagccaacataggtcaggaac 486
Query: 305 ttaggaagccagtcccacctctgccaagagaagcctttccccttatcactaacagaggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttaggaagccagtcccacctctgccaagagaagcctttccccttatcactaacagaggga 426
Query: 365 acaagcacctacctgcggtgtttattagtataccaaagttccctgagtgtcacacgtgtc 424
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acaagtagctacctgcggtgtttattagtataccaaagttccctgagtgtcacacgtgtc 366
Query: 425 tgttacacattgcagagtccatgtctgcatcctggctcctctcagcccttcctacacctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgttacacattgcagagtccatgtctgcatcctggctcctctcagcccttcctacacctg 306
Query: 485 ctcagtcttataaccctgctattttga------cacacacactctctctctctccactcc 538
||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct: 305 ctcagtcttataaccctgctattttgactctctctctctctctctctctctctccactcc 246
Query: 539 agtcttttgcctgtgttctcctggtctccctccttctccc 578
||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtcttttgcctgtgttctcctggtctccctccttctccc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 985
Length adjustment: 10
Effective length of query: 568
Effective length of database: 975
Effective search space: 553800
Effective search space used: 553800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_h23.g1 MSMg01no083_h23.g1 CHROMAT_FILE:
MSMg01no083_h23.g1 PHD_FILE: MSMg01no083_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:14 2005
(514 letters)
>mm_chr17_45610991_45611904
Length = 914
Score = 957 bits (495), Expect = 0.0
Identities = 512/523 (97%), Gaps = 9/523 (1%)
Strand = Plus / Plus
Query: 1 cgggctactctgggctacatatgaggtagcagtgcttagtctt---------aaaaaaaa 51
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 192 cgggctactctgggctacatatgaggtagcagtgcttagtctttaaaaaaaaaaaaaaaa 251
Query: 52 aaaaaacctataaagctatgagtccaataaaccttttctctccataagcttatacaccca 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaaaacctataaagctatgagtccaataaaccttttctctccataagcttatacaccca 311
Query: 112 tccaaccttttgatttcccagaactcaattgtatttcttttccaccttagtcatgcccaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tccaaccttttgatttcccagaactcaattgtatttcttttccaccttagtcatgcccaa 371
Query: 172 gtcgcttttctctggaaccttctgccgctctctagtacaggccgctcttgagacagaggg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcgcttttctctggaaccttctgccgctctctagtacaggccgctcttgagacagaggg 431
Query: 232 aagttggcggacgggattgccatatccagtattcatgggctcaccagtgcacacagtgaa 291
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 432 aagttggcggacgggattgccatatccagtattcatgggctcaccagttcacacagtgaa 491
Query: 292 aagcaatcggacccaaaaggtgcttgttagaaaggctatcattcaaaaccaacagacccc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aagcaatcggacccaaaaggtgcttgttagaaaggctatcattcaaaaccaacagacccc 551
Query: 352 ataagtcattgaaattcaagagacagcgcaagggaaaaacctaaatctcactggacctcc 411
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 552 ataagtcattgaaattcaagaggcagcgcaagggaaaaacctaaatctcactggacctcc 611
Query: 412 tagcggtgttcacgggtttgaatgtcctgcccactcctcctcctcctgactcagggctcc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tagcggtgttcacgggtttgaatgtcctgcccactcctcctcctcctgactcagggctcc 671
Query: 472 cgaaagtactcgccccgccccgtccttgggtctcctttccacc 514
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cgaaagtactcgccccgccccgtccttgggtctcctttccacc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
