Query= MSMg01no083_i11.b1 MSMg01no083_i11.b1 CHROMAT_FILE:
MSMg01no083_i11.b1 PHD_FILE: MSMg01no083_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:17 2005
(300 letters)
>mm_chr17_93872429_93873128
Length = 700
Score = 542 bits (280), Expect = e-158
Identities = 292/296 (98%)
Strand = Plus / Plus
Query: 5 gaattcagatgtgttcgagaaagagggcctccccaatcacatgctaggagtctccttggt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatgtgttggagaaagagggcctccccaatcacatgctaggagtctccttggt 264
Query: 65 ttgttgtattaagtgcttggggtacaggggacttgggggtgaagtctatagctttgatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttgtattaagtgcttggggtacaggggacttgggggtgaagtctatagctttgatca 324
Query: 125 ggacagagattaatcttttgaaaacgtataataacaaagacatggatactttttaaaggc 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacagagattaatcttttgaaaacatataataacaaagacatggatactttttaaaggc 384
Query: 185 atttaataaaaaacctggtaggtcccatgaaaaaatgggaagtatagtgatctttactaa 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttaattaaaaacctggtaggtcccatgaaaaaatgggaagtatagtgatctttactaa 444
Query: 245 aactataatccttccataggctctttcagtttttgatgagtttgacatgatgaaat 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 aactataatccttccataggctctttcagtttttgatgagtttgaaatgatgaaat 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_i11.g1 MSMg01no083_i11.g1 CHROMAT_FILE:
MSMg01no083_i11.g1 PHD_FILE: MSMg01no083_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:17 2005
(332 letters)
>mm_chr17_93967339_93968071
Length = 733
Score = 636 bits (329), Expect = 0.0
Identities = 332/333 (99%), Gaps = 1/333 (0%)
Strand = Plus / Minus
Query: 1 tttccagaagccaaatgaaagcaagattctccataaagcattttcactcagctgtggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tttccagaagccaaatgaaagcaagattctccataaagcattttcactcagctgtggccc 474
Query: 61 aacagttggagaagtggctgtattttagaagcattgagtatgttggctttgagtcccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aacagttggagaagtggctgtattttagaagcattgagtatgttggctttgagtcccaca 414
Query: 121 tgcaatcataggtcctgggcatggaatgtttgctgaactcaagcaaagcattggcctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgcaatcataggtcctgggcatggaatgtttgctgaactcaagcaaagcattggcctctt 354
Query: 181 ttctgtgtaaattacatccaaggtttgatgtgggtacagcaaactatgggagccggctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttctgtgtaaattacatccaaggtttgatgtgggtacagcaaactatgggagccggctta 294
Query: 241 gctccaatcttttcataaaag-aaaaaaaatgaaatgttcatagtggtcctcttagccgt 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctccaatcttttcataaaagaaaaaaaaatgaaatgttcatagtggtcctcttagccgt 234
Query: 300 tttggttaacactactcttactagtaccaaaac 332
|||||||||||||||||||||||||||||||||
Sbjct: 233 tttggttaacactactcttactagtaccaaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 733
Length adjustment: 9
Effective length of query: 323
Effective length of database: 724
Effective search space: 233852
Effective search space used: 233852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
