BAC Information

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BAC

Clone NameMSMg01-083P21
Chromosome17 (Build37)
Map Location 80,684,080 - 80,684,390
singlet/doubletsinglet
Overlap geneDhx57
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6
Downstream geneMorn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083P21.T7 (MSMg01no083_p21.b1)MSMg01-083P21.TJ (MSMg01no083_p21.g1)
ACCAG303966AG303967
length710716
length of high quality
(start - end)
370 (38 - 407)335 (68 - 402)
definitionCHROMAT_FILE: MSMg01no083_p21.b1 PHD_FILE: MSMg01no083_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:53 2005CHROMAT_FILE: MSMg01no083_p21.g1 PHD_FILE: MSMg01no083_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCT
TTCTCTCTCTCTTTTCTCTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCATTCTTTCTTTCTTTCTTTCTTTCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCTTCCCTCCCTCCCCTTTCTTCCT
TTCTTTCTTGCTTGCTTGCTTTCTTGCTTTCTTGCTTGCTTGCTTGCTGA
GACAAGGTCTCTTTGTGTATAGCCCTGGCTGCTCTGGAACTCACTGTAGA
CCAGGCAGGTCTGTAACTCAAGGATCTACCTGCCTCTGCCTCCCAAGTGC
TGGGATTAAAGTTACGTGCCAACATAGCCCAGCTTTTTTTTCTTTTTTTA
AAATGACACCCCCCAACAGACTCCCCTTTTATAGCTGAGCTTCAGTTCTC
TGATCATTTGATAATTCTCCTCTTAGTAAGGCAGCCCCTGTGAGGTTGCC
ACCCGGGTGTGGATAATAATAGGCATTTGGTAAATGTTGTATGTCCCGTT
ACTAGAGACATGAGCTTATGGCTCATGGACGAAACTGATAGGCTCCACTG
TGAACCCAGGATCTCTGTTTCTGTTTGCAAAAGCTCTTCTGGAAAAGATC
ACCATAATTCCTACAGCTCTTAAAATCATGTTTGCTAAAATATTAATTAT
CAAATAAATA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTTGTAATGTCCCTGATCTAAGGTT
CAGCAGTTGTGTTTGTGGGTGAGTCATTTGGGACTAGACACCACACAATC
TCTGTTCTCAGCGTTTTGATCAGTTGTGAATTTCTGCAGTGGTCGGTTCT
GTTGTACAGAGAGGTTTCTTTGATGAGGGGTGAGAACTGATAGATTTCAG
AGCTCAAAGTATAGTGACAGGCGGCAGAAAGGGACCAGAGGCTGACCTCA
GCAGGTGAAACCGTTCATTTCATATCTCAAAGACAGACACTCTTCCACAA
GAAATGTTCCCCCGTTGGAGGAAAGAGAATACTTGCAGTCTCGAGAGAGT
CTTCGGACTGAGTATGTTAATGTAGCCTCAGAGTTCTACGTATTATTCTC
TCTTTTTCTGCTATTGCTGATTTTTGTGTATATTATTTTTTATTGCTCTC
TTGCCTTTTCTATTTTTTTTGTTCTCTTATGTGTTTTGTTGTTTTTCTGT
TTTTTTCTTTTCGACCAGTTTTTTTTTTTTCTGGGTGTATTCATATATTA
TTCACTTTTATCATTTTCTTGTGCCTTTTCTTTTTGTTTTTTTGTTTTTT
TTACTGTATTTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_p21.g1 MSMg01no083_p21.g1 CHROMAT_FILE:
MSMg01no083_p21.g1 PHD_FILE: MSMg01no083_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:53 2005
         (335 letters)



>mm_chr17_80683659_80684393
          Length = 735

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 25  tttaatggggttatttgattttctgaagtccacctttgtaatgtccctgatctaaggttc 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttaatggggttatttgattttctgaagtccacctttgtaatgtccctgatctaaggttc 673

                                                                       
Query: 85  agcagttgtgtttgtgggtgagtcatttgggactagacaccacacaatctctgttctcag 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agcagttgtgtttgtgggtgagtcatttgggactagacaccacacaatctctgttctcag 613

                                                                       
Query: 145 cgttttgatcagttgtgaatttctgcagtggtcggttctgttgtacagagaggtttcttt 204
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 612 cgttttgatcagttgtgaatttctgcagtggtcgggtctgttgtacagagaggtttcttt 553

                                                                       
Query: 205 gatgaggggtgagaactgatagatttcagagctcaaagtatagtgacaggcggcagaaag 264
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 552 gatgaggggtgagaactgatagatttcagagctcaaagtagagtgacaggcggcagaaag 493

                                                                       
Query: 265 ggaccagaggctgacctcagcaggtgaaaccgttcatttcatatctcaaagacagacact 324
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 492 ggaccagaggctgacctcagcaggtgaaaccgttcatttcaaacctcaaagacagacact 433

                      
Query: 325 cttccacaaga 335
           ||| |||||||
Sbjct: 432 ctttcacaaga 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)