BAC Information

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BAC

Clone NameMSMg01-084D16
Chromosome17 (Build37)
Map Location 14,835,032 - 14,835,154
singlet/doubletsinglet
Overlap genenone
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2
Downstream geneLOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D16.T7 (MSMg01no084_d16.b1)MSMg01-084D16.TJ (MSMg01no084_d16.g1)
ACCAG304144AG304145
length779730
length of high quality
(start - end)
403 (100 - 502)124 (56 - 179)
definitionCHROMAT_FILE: MSMg01no084_d16.b1 PHD_FILE: MSMg01no084_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:12 2005CHROMAT_FILE: MSMg01no084_d16.g1 PHD_FILE: MSMg01no084_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTTTTTTCTCCCCTCCCTCTTCCTTCCTTTCTTTTTTCCCTTTCCTT
TCCACCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTCCCATGCACAGGCTGAGGGGACTTGTTCATTCATTCCC
TTAGTATTTTATTTATTTGTTTGTTTGCCATTTTTTATTAGATATTTTCT
TCATTTACATTTTAAGTGCTATCCCCAAAGACCCCTATACAATCCTGCTG
CCCTGCTCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCACTA
TACTGGGGCATATAAAGTTGCAAGTCCTAGGGGCCTCTCTTACCAATGAT
GGCCGACTAGGCCATCTTCTGCTAAATATGTAGCTAGAGACACGAACTCT
GGGGGGTACTGGTTAGTTCCTAATGTTATTCCACCTATAGGGCTGCAGAC
CCCTTCAGTTCCTTGGGTAATTTCCCTAGGTCTTCCATTGGAGGCCCTGT
GTTCCATCCAATAACTGACTGTGAGCATCCATTTCTGTGCTTGCCAGGCA
CTGGTACTGCCTCATAAGAGACAGCTATATCCCGGCCCTTTCATCAATAA
TCTTGCTGGCATATGTACTAGTGTCTTGCGTTTGGTGGCTGTATATGGTA
TGGATCCTTGTTCGGGGCAGTCTCTGGATGGTCCATCCTTTTTGACCAGT
CCCAATTTTGTTTCTGTAACTCCTTTCCCTGGATATTTTGCCCTCTATTC
TATAGAGGTACTAAGCATCCCTTCTTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCATTATGTCCCACAGAGGACAAGTCCTACTGATCTACTGCATCT
TAGTTCAGCTCATATGGAAAACCAGGGTAGCCAGTGATGCTGGCCTAATG
GCAGGGGGGAGGAGGGAAGAGAACAGGGTAGTGAGTGTGGAGAAGCTGTA
GGCTACCCTCACCCTCTCCTCACAATCTTTCTTCCCTCTCTTTTCTCTTC
CTCCCTCCCCTGCTTTTCACTCTCTTTCTTGCCCTCTCTCACGCGCTGTT
TATCTTTTTTTTTTTCCTCTCCTTCTCACCCCTCTCTCTCTCTTTCTCCT
CCTCCCCCCCCCTCTTCCTCCTTTTCCCTCCCTCCCCCTTCCTTTCTCTT
CCCCCCCCCTTTTCTCCCCCTCTCTCTTTCTTCCTTTTCCCTCTCTCCTC
TCCCTCCTCTCTTCCTCCCTCCTTTTTCCTTCTCCGTCCTTCTCTCTTTC
CTCCTCCTCTTCTCCTTCTCCTTCTTCTCTTCTCTCCCCCTCTTCTCCTT
CTTTTTCTCCTTTTCTTTTCCTCTCTCTCTCCTCCCTCTCTCTTCCATCC
TCTTTTCCCTCCCTCTTTCCTTCTTCTCTCCTCCCCCCCTCCTCCTTTCT
TTCCTCTTTCCCCTTCTTTTCCTCTCTCTTTCCCCTCCTCTCCCCTCTCC
TTTTCTCTTCTCTCTTCCCCTCTCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d16.g1 MSMg01no084_d16.g1 CHROMAT_FILE:
MSMg01no084_d16.g1 PHD_FILE: MSMg01no084_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:12 2005
         (124 letters)



>mm_chr17_14834832_14835354
          Length = 523

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%), Gaps = 1/124 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattatgtcccacagaggacaagtcctactgatctactgcatcttagttcagctcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 201 ccattatgtcccacagaggacaagtcctactgatctactgcatcttagttcagctcagac 260

                                                                       
Query: 61  ggaaaaccagggtagccagtgatgctggcctaatggcaggggggaggagggaagagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ggaaaaccagggtagccagtgatgctggcctaatggcaggggg-aggagggaagagaaca 319

               
Query: 121 gggt 124
           ||||
Sbjct: 320 gggt 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 523
Length adjustment: 8
Effective length of query: 116
Effective length of database: 515
Effective search space:    59740
Effective search space used:    59740
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)