BAC Information

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BAC

Clone NameMSMg01-084N11
Chromosome17 (Build37)
Map Location 15,172,133 - 15,172,496
singlet/doubletsinglet
Overlap gene9030025P20Rik, Tcte3
Upstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N11.T7 (MSMg01no084_n11.b1)MSMg01-084N11.TJ (MSMg01no084_n11.g1)
ACCAG304584AG304585
length690729
length of high quality
(start - end)
372 (45 - 416)210 (77 - 286)
definitionCHROMAT_FILE: MSMg01no084_n11.b1 PHD_FILE: MSMg01no084_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:58 2005CHROMAT_FILE: MSMg01no084_n11.g1 PHD_FILE: MSMg01no084_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGAATTGCCAAAAGCATGCTAGGATTTTTTTTTTTAACATGTTT
AGTTTTTTGCTTTAATATTCATTAGGGCAATTCATTTTACTTTTTGGTTT
ATTTATTTATTTACCAGCAGTTGATTGTGTATGCTGTGGTATTAAAGTAA
CTAAGACACACATAAACATACACGTTCAAATTTGTGTGTTCATATCTATT
TATGTGCTAGCCTAACTGAAGAGCAGTTCACTGAGATGTATAGATTTGGG
ATTTAGTTTATTTCAGCACACAATTTTTTTATTTGTAAGTTTTTAATAAT
AAAATTTATTAAAATTCGAGGGCTGAAGATCAAACCCAGGGCCTCACCCA
TGGTAGGCAGATGACCCACATAAATCCAGCACTGTCCATTATTTTGACAG
ACTTATTGTTCAAATTTCCTACTATAATGCTAGATTAGTGTATTTCTCCT
TTAAACCTATACATTTTCCTCTCATACACACATTGATGCTCTATCAGCTG
CATATTTGCAAGAATTAATGTATCCTAGGCTATTGGTCCCATTCTTGATA
AACAGTGACCCATTTTTTGCCGACAACTTTATTTGCTTTGGTTCTTGCCT
TTGTCTGAAGTCTACCGCTACCCAGCTAACTCTGATATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACTGCAATTTTTACCAACATT
GAATATTGCCAGAAGTTAAAATTATGCAGGCACTCCTAATGAGCATGTTG
TGACATGTCTGTGGTATTGATTTGAATATTTCTAATCAATAGAAATGTTA
GACATCCTCTGATTTGCTGATTTTATTCTAGCTTCCTGACTGGGCTATCT
ATTCAACTCTTTTACCTATTTTTAAAAAGTACTTGTCTACACCAAAATTA
AACCAAGAAGTAAAAAAAATCTAAATAGACCCATATCAAATGATGGGACT
GAAATAGTAATAAAACCCCCTTGCACTAAAAAAATACTCCAGGGCCAGAT
GGATTCACAGCAGAATTCCACCAGACTTTGAAAGATCTGCAGTGAATCCT
TCTTCAACTATTCTAAAAAGGAGGAGGAATATTGTAGTACGAATAAAGCA
TATAGGTTGAGTATTAATATACCGATTGCATGATTTCCTTTCCTCCTTTT
CCTTCTACTTTTCCTTCTTTTTCGTCTGTTACTCATATTCACTCCTCGCT
TTCATTCTCCCCACCCCTCTATTTTCTTTCTCTCTACTTTATACCATTTT
TCGCCTCATCCTCCTTTTTATATTTCTTCCCTCCCCCTTTTTTTCCTTTT
CTCTCTCTCTTCTCCCCTTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n11.b1 MSMg01no084_n11.b1 CHROMAT_FILE:
MSMg01no084_n11.b1 PHD_FILE: MSMg01no084_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:58 2005
         (372 letters)



>mm_chr17_15171929_15172698
          Length = 770

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 6/368 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagaattgccaaaa--gcatgctaggatttttttttttaacatgtttagtttt 62
           |||||||||||||||  ||||  ||||||||||||||||||||  |||||||||||||||
Sbjct: 205 gaattcttagaattg--aaaacagcatgctaggattttttttt--aacatgtttagtttt 260

                                                                       
Query: 63  ttgctttaatattcattagggcaattcattttactttttggtttatttatttatttacca 122
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctttaatattcattagggcaattaattttactttttggtttatttatttatttacca 320

                                                                       
Query: 123 gcagttgattgtgtatgctgtggtattaaagtaactaagacacacataaacatacacgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagttgattgtgtatgctgtggtattaaagtaactaagacacacataaacatacacgtt 380

                                                                       
Query: 183 caaatttgtgtgttcatatctatttatgtgctagcctaactgaagagcagttcactgaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatttgtgtgttcatatctatttatgtgctagcctaactgaagagcagttcactgaga 440

                                                                       
Query: 243 tgtatagatttgggatttagtttatttcagcacacaatttttttatttgtaagtttttaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtatagatttgggatttagtttatttcagcacacaatttttttatttgtaagtttttaa 500

                                                                       
Query: 303 taataaaatttattaaaattcgagggctgaagatcaaacccagggcctcacccatggtag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataaaatttattaaaattcgagggctgaagatcaaacccagggcctcacccatggtag 560

                   
Query: 363 gcagatga 370
           ||||||||
Sbjct: 561 gcagatga 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 770
Length adjustment: 9
Effective length of query: 363
Effective length of database: 761
Effective search space:   276243
Effective search space used:   276243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)