Query= MSMg01no084_o04.b1 MSMg01no084_o04.b1 CHROMAT_FILE:
MSMg01no084_o04.b1 PHD_FILE: MSMg01no084_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:02 2005
(511 letters)
>mm_chr17_51172706_51173616
Length = 911
Score = 957 bits (495), Expect = 0.0
Identities = 504/507 (99%)
Strand = Plus / Plus
Query: 5 gaattcaccaaagctcagataacttcatgtttgtggaccaatcagatgagataatagtga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaaagctcagataacttcatgtttgtggaccaatcagatgagataatagtga 264
Query: 65 gtaaataaatagcctaacaaatcaaataagtttatatactggattcttgtactgctatgt 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaataaataacctaacaaatcaaataagtttatatactggattcttgtactgctatgt 324
Query: 125 taattatttaagtaagtcacactgaaatttcaagtcattatcaaatagcctaaagtgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taattatttaagtaagtcacactgaaatttcaagtcattatcaaatagcctaaagtgtgg 384
Query: 185 tattgtggttgattgaaatcccaaatgttgctcaaagagtcagaggcagatatttgcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattgtggttgattgaaatcccaaatgttgctcaaagagtcagaggcagatatttgcacc 444
Query: 245 caaccaatgaacaaaagcagctgacccctgttgctgaattagggaaggctgaaagaagct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaccaatgaacaaaagcagctgacccctgttgctgaattagggaaggctgaaagaagct 504
Query: 305 gaggagaagggtgatcctgtaggaggaccagcagtctcaattaatctggacctccgagat 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 gaggagaagggtgatcctgtaggaggtccagcagtctcaattaatctggacctccgagat 564
Query: 365 ctctcaaacactgcaccaacaaacagacagcatacaccagctgacatgagatccctaaca 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 ctctcaaacactgcaccaacaaacagacagcatgcaccagctgacatgagatccctaaca 624
Query: 425 cacatacagtagaggacttccaggtctgtgttcattcagagatgatgcacctaaccctca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacatacagtagaggacttccaggtctgtgttcattcagagatgatgcacctaaccctca 684
Query: 485 agacactggaggccccagggagttcag 511
|||||||||||||||||||||||||||
Sbjct: 685 agacactggaggccccagggagttcag 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_o04.g1 MSMg01no084_o04.g1 CHROMAT_FILE:
MSMg01no084_o04.g1 PHD_FILE: MSMg01no084_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:02 2005
(446 letters)
>mm_chr17_51316583_51317428
Length = 846
Score = 717 bits (371), Expect = 0.0
Identities = 420/449 (93%), Gaps = 23/449 (5%)
Strand = Plus / Minus
Query: 1 agtggatgtgataactg-tatcaacttgttattctgcatttctcacgtggtgatggacaa 59
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agtggatgtggtaactgata-caacttgttattctgcatttctcacgtggtgatggacaa 632
Query: 60 gaccttgttcaatacaaaaggtgtaaatatcttctgtgtatagaaatgaagttacgtgtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaccttgttcaatacaaaaggtgtaaatatcttctgtgtatagaaatgaagttacgtgtc 572
Query: 120 tgtgaaggac--acacacacacacacacacacacacacacacacacaccttggaatgaag 177
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 571 tgtgaaggacggacacacacacacacacacacacacacacacacaccccttggaatgaag 512
Query: 178 aggtggcctgataggaaagttcagtgtcagggtgcactaataaagtttgcttgggggaag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aggtggcctgataggaaagttcagtgtcagggtgcactaataaagtttgcttgggggaag 452
Query: 238 tagagtgaaccaacgctggattccaggagaaggaaaagaagtacaaattgtgtgctctgt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tagagtgaaccaacgctggattccaggagaaggaaaagaagtacaaattgtgtgctctgt 392
Query: 298 atgctgtgtggtgcctgcaccacatttttatttatttatttatttatttatttatttatt 357
||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 391 atgctgtgtggtgcctgcaccacatttttgttt-------------------tatttatt 351
Query: 358 tatttatttatttatttatttatttttgttaaaatggcttggcgtactttttaaaagact 417
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 350 tatttatttatttatttatttatttttgttaaaatggtttggcgtacttcttaaaagact 291
Query: 418 tgcttcccagttcattgagtttttattaa 446
||||||||||||||||||||||||||||
Sbjct: 290 cgcttcccagttcattgagtttttattaa 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
