BAC Information

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BAC

Clone NameMSMg01-084P07
Chromosome17 (Build37)
Map Location 9,039,805 - 9,039,925
singlet/doubletsinglet
Overlap genePde10a
Upstream geneLOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817
Downstream gene1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P07.T7 (MSMg01no084_p07.b1)MSMg01-084P07.TJ (MSMg01no084_p07.g1)
ACCAG304670AG304671
length703711
length of high quality
(start - end)
34 (69 - 102)121 (147 - 267)
definitionCHROMAT_FILE: MSMg01no084_p07.b1 PHD_FILE: MSMg01no084_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:07 2005CHROMAT_FILE: MSMg01no084_p07.g1 PHD_FILE: MSMg01no084_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGACCGCGGAATT
CTGAATGTTCACCCCTAAGAGCATCTTTATCGTTTCCGATAACAGCGTCC
AGACTTCAAATAGAATGTTCCAGAAATAAGAAGGCTGTGGCAGAGCCTTT
CAATCTGGCCCCTCATCAACCACCTTCCTGGAGTCCCACAGAGAATTATT
TGTAATTCTGTACCAATCTTCCCGGCTCATTCTGTTAATTTGATTTTTCT
GACTCTATTGACCACCTAGTTTCAAAGGTTTTAACAAGTATTTAAATATG
CCCTAAATAAGAGAATTTTTTGTTATTAACACTCACCACTAGATACCAAC
CCTATATACCTATAAGGATAACATACCTTTCCATCCATTCTTTCACTCTT
TCATTCATTCTCTCCCACGCCCTCATTATGTATATACATAAGTTACATGT
GCATCCCTGCACACACTCCCTACAGGTTGGCTCCACGCACAGCTTCCTTT
TGCTTTCTGGCCTCTTTCCCACTCATTAAGATTTTGAGGCTCGCATCCTT
TGTGCGCCTATGTGTCCCTACACTCTTATCTTTGCGTATCATACCTCCTA
GTTTTTCCACTATTACCCCCAGCATCCGTCCTTTTTCCGATTCACCCGTC
TATAGTGGCCAACGCTTTCCGCTATTCCCGTCGCCCTTTTCGCCCTTGTT
TTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATGTAGACTTCACTAAGCACTGTTAGT
CTGAGAAGCCTATTGGCTGCCTCCATACACATCTGGAATGTGGGCAGGTC
ATTGGCAGCTACCATAGCACACTTTAAGGTAATTATTTTATCCCTTTTAA
AGATGGAATTTGTTTTGACTTCTTCTCTACCCCCTTCTAAATTCTACCTG
AGCCGTCTTCCTATTCTGGAGTAAACAGCTTTCACAGGCTCACAAAGAAC
AATGAGACGGAGGTTGGCTTCTCAGAACAGGTCTATCTGATTCGTTCCTG
ATTCTTTTCTTGACATGATTCTGAATCTCTATCAAGCATGTGCTTGTCCT
ATTAATAAGAACGCCCAACTACCCTTCTTTGCAAATTTCACGAATCTCCA
CTCATGACTAGGTTATTTCCAGACCCCGGCATGTTCTACTCGCGGTCCCC
TGTTTCTTATCCTTTCTCTTACACATTTCGCTGCCTCCCCTGTCTCATAT
ACAATGTCATCCTCGCCTTGTTAGGATGTTCTCAGAGCCGTAAATTCCCA
TTACGAACCAACTCGTCTCCCCTGGGGGGTACCAACAATTTTTAGTCTCT
ACGGGTCAAATATCGTCCACCCCCCTTTGCCTACCTTTCTAACACGCCTG
TTTTTTTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p07.g1 MSMg01no084_p07.g1 CHROMAT_FILE:
MSMg01no084_p07.g1 PHD_FILE: MSMg01no084_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:07 2005
         (121 letters)



>mm_chr17_9039605_9040125
          Length = 521

 Score =  195 bits (101), Expect = 6e-55
 Identities = 116/121 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcattggcagctaccatagcacactttaaggtaattattttatcccttttaaagatgg 60
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ggtcattggcagttaccatagcatactttaaggtaattattttatcccttttaaagatga 260

                                                                       
Query: 61  aatttgttttgacttcttctctacccccttctaaattctacctgagccgtcttcctattc 120
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 261 aatttgttttgacttcttctctacccccttctaaattcaacctgagtcgtcttcctattc 320

            
Query: 121 t 121
           |
Sbjct: 321 t 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)