BAC Information

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BAC

Clone NameMSMg01-086B16
Chromosome17 (Build37)
Map Location 48,134,995 - 48,308,868
singlet/doubletdoublet
Overlap gene1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419
Upstream geneUbr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
Downstream geneTrem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086B16.T7 (MSMg01no086_b16.b1)MSMg01-086B16.TJ (MSMg01no086_b16.g1)
ACCAG305506AG305507
length794755
length of high quality
(start - end)
287 (137 - 423)367 (127 - 493)
definitionCHROMAT_FILE: MSMg01no086_b16.b1 PHD_FILE: MSMg01no086_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:42 2005CHROMAT_FILE: MSMg01no086_b16.g1 PHD_FILE: MSMg01no086_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,308,582 - 48,308,868)(48,134,995 - 48,135,361)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNCCCCCCCCCNCCCCCC
TGTATTTTTNTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCAGTGATTTGCTAAATGGAAACGTGGAATTGA
GTGGTTGATGTGGGCGCAGTAGAAGCTATCTTCACCCGGTGGCACAGGGA
GACACAGCTCACATAGTAAAAGTCTGTGAGTCTCGCAGTCAAGGCAGTGG
CAACAGCGATGGCCTGCAGCAGCAATGAAAATCCACGTGGTGGATGATGG
CAGGTGCCAGCAGATGGTGTAGCAGTGGCTGCAGGCAGTGATAGCTATGG
AGGCTATCCACCATGACATTGGTTCTCCAGTGGCAGTATTAACAGCCACC
AGGGCTCTGCAGCTCTCCTGCATATTTTCTTCACAACGACCTAACAAGGT
AAAACAGTTTCTATGTGAGCTTTATTGTCAGAGAGAGAGGCAAGGTGTCT
ATGGAAAGAGAAGGGAGGAAGATAGAGGGTTGCGGGCTTTCTTTATATAT
GGTGTGATGAAGAAATTACAGGTAAATGTGGCAAGTTGAGGCACCACACT
TCTGGGTATTATGGAAGGCTGTCTCCTCTGCTAACAGGGCCTTTCACGTC
CCATCCTATTGTGATGTCACTGGGTTTTCCGGCGCCTCTTGATTCTGGAA
CATGGCCTTGTAATGCCATTTCCTGTCCCCCCTGAACGCCTTATTCTTAT
ATTCTCCCACTCTAACGTGCTCCCAGTTCTTCTTTCTTCTTCAA
NNTTTTTTNNNTTTTNNNTTTTTTTTTTCCTTNCCCCCCCTCCCCTCCTC
TCTCCTTTCCGATGATATGAGAGGCCTGGCGGCCGCCTGTTCACAAATGG
AGGTGACCTATAGAATTTCCGCGAAATTCAGGAGCAGCTTTGGGGCCTCC
GAGTAGGGGTCAGGGTGGCTCACTCAACATGGGAGGTCCGAACATGTGTG
CATGGCTCATCTCTTCCAGGGACATGATTTTGAGAAGAGGGGTGTTTGAA
TCCAGGGCAGAAGTGCTTCCCCCAAGGATCAGTCAGGACTCTGCCACTGA
ACCAAGAAGGTTCATAGAATCCCAACTGTGGGATCCTTCAGGGGAACTTG
GGGCTGCCTGCGCTTAGACACTGTCCTCTTTCACTCACCTGAGTTTGTCT
GCTCTGCACTGGTCACTGGTCAGTGAAGATGCAGTAACGCACAAAACAGA
CTGCAGAGCCCTGGCGGTGCATGCCTGCCATCCTCGAATTTGGAACGTGA
GTGAGCTAGGAGTTCAAGGTCATCCTAAGCTGCATAGCAAATTGGAGGCC
AGTCTGAGTTCCTTAAGACCTTGTCTCAAAAGCCTGTGCGGTAGTGGTGT
GTGCCTTTAACCCCTTTGAATGGCTTCTCCAGTGATATAAAAAACTGAAT
TGCATTGGAAATTATAGTTAAACGGGTTCGGGTTTTTTGGGGCAGCTCTC
ACCGGTAAAAGGTCAGTGAAATTCATAAGGGCGGTCTGGTGTTACGGCAC
TTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_b16.b1 MSMg01no086_b16.b1 CHROMAT_FILE:
MSMg01no086_b16.b1 PHD_FILE: MSMg01no086_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:42 2005
         (287 letters)



>mm_chr17_48308382_48309068
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgtggaattgagtggttgatgtgggcgcagtagaagctatcttcacccggtggcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 487 aaacgtggaattgagtggttgatgtgggcgcagtagaagctatcttcacagggtggcaca 428

                                                                       
Query: 61  gggagacacagctcacatagtaaaagtctgtgagtctcgcagtcaaggcagtggcaacag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 gggagacacagctcacatagtaaaagtctgtgagtctcgcagtcaaggcagtggcagcag 368

                                                                       
Query: 121 cgatggcctgcagcagcaatgaaaatccacgtggtggatgatggcaggtgccagcagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgatggcctgcagcagcaatgaaaatccacgtggtggatgatggcaggtgccagcagatg 308

                                                                       
Query: 181 gtgtagcagtggctgcaggcagtgatagctatggaggctatccaccatgacattggttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtagcagtggctgcaggcagtgatagctatggaggctatccaccatgacattggttct 248

                                                          
Query: 241 ccagtggcagtattaacagccaccagggctctgcagctctcctgcat 287
           ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 247 ccagtggcagtagcaacagccaccagggctctgcagctctcctgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no086_b16.g1 MSMg01no086_b16.g1 CHROMAT_FILE:
MSMg01no086_b16.g1 PHD_FILE: MSMg01no086_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:42 2005
         (367 letters)



>mm_chr17_48134795_48135561
          Length = 767

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaggagcagctttggggcctccgagtaggggtcagggtggctcactcaacatgggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaggagcagctttggggcctccgagtaggggtcagggtggctcactcaacatgggagg 260

                                                                       
Query: 61  tccgaacatgtgtgcatggctcatctcttccagggacatgattttgagaagaggggtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgaacatgtgtgcatggctcatctcttccagggacatgattttgagaagaggggtgtt 320

                                                                       
Query: 121 tgaatccagggcagaagtgcttcccccaaggatcagtcaggactctgccactgaaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatccagggcagaagtgcttcccccaaggatcagtcaggactctgccactgaaccaag 380

                                                                       
Query: 181 aaggttcatagaatcccaactgtgggatccttcaggggaacttggggctgcctgcgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggttcatagaatcccaactgtgggatccttcaggggaacttggggctgcctgcgctta 440

                                                                       
Query: 241 gacactgtcctctttcactcacctgagtttgtctgctctgcactggtcactggtcagtga 300
           |||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacactgtccacaaccactcacctgagtttgtctgctctgcactggtcactggtcagtga 500

                                                                       
Query: 301 agatgcagtaacgcacaaaacagactgcagagccctggcggtgcatgcctgccatcctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgcagtaacgcacaaaacagactgcagagccctggcggtgcatgcctgccatcctcg 560

                  
Query: 361 aatttgg 367
           |||||||
Sbjct: 561 aatttgg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)