CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATATATCTGTACACATTCAATTTATACAAATTACATAGTAGAACAT
GTAATTCCCTTTTCATTGTGGCCATGGTATTTTTATGTTGATAATTTTAA
TAAAAGAGAAAGTTGTTGTTTAACATGTTATTGTATTTTAAAATATATTT
GTGTTTTAGCAAGAATAAGGAAGAAAGGTTGGTATAATTTTGTGTAATCA
TTTTGAGAACCGTTATCAGATTAACCAATAATAAGTTATTTAACAAAATA
CTCCAGACAACTCATTTTAAAGAAAACTTTGTTACACTCAGAGTTTTGTT
GGCCCAAAAGCCAAAGGTCCTAGTAGAAGCAGTGAGTGGTGGCATATCAT
GGTAGGAATAATCAGAGAAGCAAAATTATGCCATATGAACCAAAGCTAAG
GGTGTGAAACAGTGACAGAGTCAGAAACCGACACACAGACACACAGACAC
ACAGACACACAGACATGTACTTGTGCACACACATGGACCCATACAGATAG
AGGGGGGGGAGAGGGAGAGAGAAAGGGAGGTTTNTCTTCCTCTTTTTTCT
TTTTCCTCCCTCCTCTCCCTCCTCCCCCCCCCCTTTCTTCCCCTTTCCTT
CTCCTCCCCCCTCTCCTTTCCTCCCTCTTCCCCTCTCCTCTCCCTCTCTC
TCCTTCCCTCCTCCACCTTTTTCT

CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAAAAACACTTCAAAATTTTGCTTATTTTCCAAGGA
GATTCATTTATTTTTTTAAATTTCCTTTTATTTTTAATTTTTTTATACTC
CATATTCCATTCCTTGGCTTCCCCATCCTCCCTCTGACTTCTCCACATCC
CACACCTCCTCCCCACCCTATCCCGATGCCACATGGATGACCCTACTCCC
CACTCCACTTGACCTCTATACTCCCTGGGTCCTCCTGTCTCTTGAGGGTT
AGGTGCATAATCTCTGAATGTTACTGNATCAGAAGTCCTCTACTGTATGT
GTGTTGGGCACCTCATATCAGCTGCTGTACGCTGTTTGTTTGGTGGTCCA
ATGTTTGAGTGATTTCAAGCTTCAGATTGAGACTGCTGTTCCTCCTGTAG
GATCGCCTTTCTCTTCAGCTTCTTTTAGCCTTCCCTATTTCAACAGCAAG
GGTCAACAACAAGGGTGTTGCGCGCCCCCCCAACTGGCCAGGAAGAACGA
CGCCACAGCAGGATCCTTCTGCACACGTTTATTCAGTCCTATTTCTTCTT
GTTTATATCTCCCTTGTTTATATCTCCCCTGCTTATATCTCCCTTGTTTA
TATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTAAATCCCCCTTGTTT
ATATCTCCCCCCCAATAGCAAACCTC

Query= MSMg01no086_g23.b1 MSMg01no086_g23.b1 CHROMAT_FILE:
MSMg01no086_g23.b1 PHD_FILE: MSMg01no086_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:11 2005
         (537 letters)



>mm_chr17_94086896_94087832
          Length = 937

 Score =  924 bits (478), Expect = 0.0
 Identities = 520/534 (97%), Gaps = 1/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacatatatctgtacacattcaatttatacaaattacatagtagaacatgtaat 63
           |||||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||
Sbjct: 638 ggaattcacatatatctggaaatattcaatttacacaaattacatagtagaacatgtaat 579

                                                                       
Query: 64  tcccttttcattgtggccatggtatttttatgttgataattttaataaaagagaaagttg 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | 
Sbjct: 578 tcccttttcattgtggccatggtatttttatgttgttaattttaataaaagagaaagcta 519

                                                                       
Query: 124 ttgtttaacatgttattgtattttaaaatatatttgtgttttagcaagaataaggaagaa 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgtttaacattttattgtattttaaaatatatttgtgttttagcaagaataaggaagaa 459

                                                                       
Query: 184 aggttggtataattttgtgtaatcattttgagaaccgttatcagattaaccaataataag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggttggtataattttgtgtaatcattttgagaaccgttatcagattaaccaataataag 399

                                                                       
Query: 244 ttatttaacaaaatactccagacaactcattttaaagaaaactttgttacactcagagtt 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 398 ttatttaacaaaatactccagacaactcattttaaagaaaactttgttgcactcagagtt 339

                                                                       
Query: 304 ttgttggcccaaaagccaaaggtcctagtagaagcagtgagtggtggcatatcatggtag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttgttggcccaaaagccaaaggtcctagtagaagcagtgagtggtggcatatcatggtag 279

                                                                       
Query: 364 gaataatcagagaagcaaaattatgccatatgaaccaaagctaagggtgtgaaacagtga 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 278 gaataatcagagaagcaaaattatgccatatgaaccaaagctaagggtgtgaaagagtga 219

                                                                       
Query: 424 cagagtcagaaaccgacacacagacacacagacacacagacacacagacatgtacttgtg 483
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 218 cagagtcagaaaccgacacacagacacacagacagacagacacacagacatgtacttgtg 159

                                                                 
Query: 484 cacacacatggacccatacagatagaggggggggagagggagagagaaagggag 537
           ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 158 cacacacatggacacatacagatag-gggtggggagagggagagagaaagggag 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)