BAC Information

Click to search

BAC

Clone NameMSMg01-086N10
Chromosome17 (Build37)
Map Location 78,016,765 - 78,017,062
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N10.T7 (MSMg01no086_n10.b1)MSMg01-086N10.TJ (MSMg01no086_n10.g1)
ACCAG306042AG306043
length669671
length of high quality
(start - end)
299 (48 - 346)284 (58 - 341)
definitionCHROMAT_FILE: MSMg01no086_n10.b1 PHD_FILE: MSMg01no086_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:44 2005CHROMAT_FILE: MSMg01no086_n10.g1 PHD_FILE: MSMg01no086_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATATCCAGAGGATCCGCGGAATTCAGTTATAGTTCCTTGCCAA
ATTCCATTTCTTCTTTTTTCATTATGGTAATATAAAATAAAATGAATATT
ACATCTTCATCTCCAGTTCCTGGCACAGAAACTTAGATTATCACCTTAAG
TTCACCTTATTATCAGTATGACTATTTTCTACCTTATTGTATCTTAAAAA
TAGTAAGTTCCAAAAAAGCTAATATTTTAGATTTCTAGGGTTAAGAAAAT
CAACATGTAATTGTAAAGAGAAGGGACAAACACAGCCCTTAAGAATATTT
TTTTTATATAAGAATTGGTCTCATGGCCACAACAATCTCTAATCAAAAGA
AGAAATGCCTTTGTCCATATATAATGCCGTCCCACATTAAGCTGTTGAAA
TCATTAAAAAAGAAAAGGAAATTTATTGATTCTCTGTCTTAGCAATAAAT
TGTATTTGTCATTGGCATCTAGCTTGGTAGCACTCAGTACAGTGCATGCA
GTGTAATAAACACTTACTACATGTTTTAAATGGCCAAGTGACTAAGTGAT
CTAGAACTATGTTGATGAGAAGAGAGCAGATACCCACCGGAGAGCTTCGT
CTTTACTGGAAAGACAACTTCCTTGGGTAAGACAACTTTATTTTGTTGTA
CAAAGCATTGTGTACAGAA
NGGAGGCGCCGGTCGTACCCGGGAGGTGACCTATAGAATGTCANGCACCA
TTCCNGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGTTT
CTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTG
ATCGTAGCCATTCTGACTGGTGTGAGGTAGAATCTCAGGGTTGTTTTGAT
TTGCATTTACCTGATGATTAAGGATGTTGATCATTTTTTCCCGTGCTTCT
CAGCTATTCGGTATTCCTCACTTGAAAACTCTTTTTTAGCTCTGNACTCA
TTTCTTAATGGGGGCTATTTGAAGTTCTGGATTTTTTTTTCTTCCGCTCT
CCCCATATATTGGGTATTAGTCCCCTATCAGATTTAGGAATGGTGAAAAT
CCTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGACAGCGCCTTTTGC
CTTACAGAAGCTTTGCCATTTTATGATGTCCCATTTGTCAATTCTTGAAC
TTACAGCACAAGCCATTGCTGTTCTGTTTAGGAATTTTTCTCCTGTTTCC
GTATCTTTCGAGGTCTTTCCCCACTTTCCCCTCTTTAAATTTCCCTGTCT
CCTGGTTTAAGGGGAGCCCCCTGAATCACTTTAACTTGAACTTCGCATCG
GGGAGATTATACCGTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n10.b1 MSMg01no086_n10.b1 CHROMAT_FILE:
MSMg01no086_n10.b1 PHD_FILE: MSMg01no086_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:44 2005
         (299 letters)



>mm_chr17_78016565_78017262
          Length = 698

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%), Gaps = 1/299 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattccatttcttcttttttcattatggtaatataaaataaaatgaatattacatctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caaattccatttcttcttttttcattatggtaatataaaataaaatgaatattagatctt 260

                                                                       
Query: 61  catctccagttcctggcacagaaacttagattatcaccttaagttcaccttattatcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctccagttcctggcacagaaacttagattatcaccttaagttcaccttattatcagt 320

                                                                       
Query: 121 atgactattttctaccttattgtatcttaaaaatagtaagttccaaaaaagctaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgactattttctaccttattgtatcttaaaaatagtaagttccaaaaaagctaatattt 380

                                                                       
Query: 181 tagatttctagggttaagaaaatcaacatgtaattgtaaagagaagggacaaacacagcc 240
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 381 tagatttctagggttaagaaaatcaacatgcaattataaagagaagggacaaacacagcc 440

                                                                      
Query: 241 cttaagaatattttttttatataagaattggtctcatggccacaacaatctctaatcaa 299
           ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct: 441 cttaagaatattttttt-atataagaattggtctcatagtcacaacaatctctaatcaa 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space:   199810
Effective search space used:   199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)