BAC Information

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BAC

Clone NameMSMg01-087B09
Chromosome17 (Build37)
Map Location 85,137,289 - 85,295,984
singlet/doubletdoublet
Overlap geneLrpprc, LOC668848
Upstream geneMta3, Haao, Zfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8
Downstream gene1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B09.T7 (MSMg01no087_b09.b1)MSMg01-087B09.TJ (MSMg01no087_b09.g1)
ACCAG306216AG306217
length703708
length of high quality
(start - end)
131 (71 - 201)217 (86 - 302)
definitionCHROMAT_FILE: MSMg01no087_b09.b1 PHD_FILE: MSMg01no087_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:04 2005CHROMAT_FILE: MSMg01no087_b09.g1 PHD_FILE: MSMg01no087_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,137,289 - 85,137,419)(85,295,768 - 85,295,984)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCATTCTCTGAACAACTCTATAGACTTGCACTGACCCGGGTGG
GCACAGTTCTAAAATACTAACCGCTAGTCTTCTCCTGCCATTCATGTGAC
ATCTGTGTACCTCACATGAAGCCGAACACTGAAACCATGTAGAATAAAGA
AGACTATCTATCCCTACCTTTGAGGGGCAGAGAGAATTACAATTACTGCT
CTCTCACCATAATCCAGGAAATGCGCAAGCTGCTTTGCACACATTATGTG
ATTGAGTCTTAGAGACATATTTTACATTCCCTCTTACAGACATAACAGCT
CACCTTTGTTTTTTATCCCCCCCCCCCAAACTGGCTCGCATGCCTCTGGT
AGGGTTCTGCTTCCCCTACAGATAGAATACAGATGTCCTCAGTTAGTGTT
TCCCACACAACGCATGATAGCGTTCTCTTTACAGCTGCTGAAGTACTTTC
TAGACTGTACCTTTCCAAGCACCCTCCAATACACTGATATCCACCGCATA
CATATTATCTACCATCTGATTTTTGATCCCCTCAATCTCCTGTGCAGCTG
GCTACCAGTTTTATTCCTCTACCAGTGTATTTCCACAGTTCGTCCATCTC
CCCCTGTTACCCATGGCCCTTGTCCCGATTCTCCACTACCCTCGCCCCGA
ACG
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCGCGAAATTCAGAATGTGGGGTGTGTCTGTCTC
ACAAATCCACATGTTCTACATTGAGAAGTGGGCAGAACTGCCCAGAAAGC
CAAAGATGAACTTCTGGAAACAGCACCCAGGGAGTTTCAGGATCTGTGCC
TACCTCTGGTTCACTGCAGTGGGAGTCCTTAGATTTGGGGAAGGATCTGG
GTGATTTGCACACTGATGAAGTAGACTGCTTTGCCTCAATTCTTTGTTGC
CTTATTGTTGGGTGAGAAGATATCCTACCTTCCTCTGCTCCAAAGGGACA
GACAGATTCTTGCTTACCGGTCTCTCACCTAGTTTCCACCTGGAAGCTCC
TGTGATTAATTATCCCCCCCCCATCCCTCCTTTTTCACCGAGCTTAATTC
CGCTTCACTCAGCTTGCTTTGATTTGTACCTCATTGATCCATTTTGCCTA
CAGATAGCAGCCCTTCTGCGAATATTCTCCGCCGATTGTGCACATGATTC
GACTCATAACTTTGATACATTTCTCGCCTCGTGTTTTTTTACTCTATTTA
CGATCCCCCCCGTTTCTATTCTTCCTACCTGTCCAATCTTGCCCGTAGCT
GGCACTAATAAACGCATGCCCATTTCCCCCGTATGTTATACCCCTATTCA
GTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b09.b1 MSMg01no087_b09.b1 CHROMAT_FILE:
MSMg01no087_b09.b1 PHD_FILE: MSMg01no087_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:04 2005
         (131 letters)



>mm_chr17_85137089_85137619
          Length = 531

 Score =  238 bits (123), Expect = 1e-67
 Identities = 129/131 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctatagacttgcactgacccgggtgggcacagttctaaaatactaaccgctagtct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aactctatagacttgcactgacccgggtgggcacagttctaaaatactaaacgctagtct 260

                                                                       
Query: 61  tctcctgccattcatgtgacatctgtgtacctcacatgaagccgaacactgaaaccatgt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tctcctgccattcatgtgacatctgtgtacctcacatgaagccgcacactgaaaccatgt 320

                      
Query: 121 agaataaagaa 131
           |||||||||||
Sbjct: 321 agaataaagaa 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_b09.g1 MSMg01no087_b09.g1 CHROMAT_FILE:
MSMg01no087_b09.g1 PHD_FILE: MSMg01no087_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:04 2005
         (217 letters)



>mm_chr17_85295568_85296184
          Length = 617

 Score =  366 bits (189), Expect = e-106
 Identities = 210/217 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtgtgtctgtctcacaaatccacatgttctacattgagaagtgggcagaactgcccag 60
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 417 gggtgtgtctgtctcacaaacccacatgttctacattgagaagtgggcagaacttcccag 358

                                                                       
Query: 61  aaagccaaagatgaacttctggaaacagcacccagggagtttcaggatctgtgcctacct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 357 aaagccaaagatgaacttctggaaacagcacccagggagtttcaggatctgtgcctactt 298

                                                                       
Query: 121 ctggttcactgcagtgggagtccttagatttggggaaggatctgggtgatttgcacactg 180
           ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||
Sbjct: 297 ctggttcactgaagtgggagtccttaggtttggggaaggatctgggtgatttgcagtctg 238

                                                
Query: 181 atgaagtagactgctttgcctcaattctttgttgcct 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 atgaagtagactgctttgcctcaattctttgttgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)