BAC Information

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BAC

Clone NameMSMg01-087J23
Chromosome17 (Build37)
Map Location 81,016,071 - 81,170,898
singlet/doubletdoublet
Overlap geneMap4k3, LOC100043697
Upstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik
Downstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087J23.T7 (MSMg01no087_j23.b1)MSMg01-087J23.TJ (MSMg01no087_j23.g1)
ACCAG306602AG306603
length716723
length of high quality
(start - end)
248 (69 - 316)215 (70 - 284)
definitionCHROMAT_FILE: MSMg01no087_j23.b1 PHD_FILE: MSMg01no087_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:49 2005CHROMAT_FILE: MSMg01no087_j23.g1 PHD_FILE: MSMg01no087_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,016,071 - 81,016,318)(81,170,689 - 81,170,898)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CCTATTTTCCAGAGAAGAGATGTGCATTTTCTTGGTTTTCAATGCTGTAA
GAGATCCAAATGGAAAGACGGCCACAACTCCCTTTTATTTCCATCAGAAG
GTAGACGGGGGTCTAGGCAGCCATTGGCTGGGGATGGTAAGAGTATACAT
ACACTGCACACAGCAGAGTCGTGGTCTCTCCTACTACAATGACTGCGTTC
TAACAAAGCCAACCGCTCAAGGGGCCTTCCATCACAGCAGGGAAGCAAAC
TGTGAACCTGAAACTGCTGCTCACCCTGCAGTTCAGTCAGAGTTCAGCTA
CGGTCATCTTTTCTCTCCACCCCACCCCCCAGAGTCCTCTCATCCCCCAG
TGAGATGGTCTCCTCAGACCAGTTAAGCCAATCTAGATAACCTACCACAG
GTATACCTAGAGGCCTGTCTGACACTCAATTCTGGATCTGTTATGGCGAT
AATACTAACCTTTCATTTTTGCTACTATTATATCTGACCCATCGTTTATG
ACACTGCGTGTGTGTCCCTGTGCCGCTTCTTATATTCCATGAACTTGCGC
GCCCCCAACCTCCATACCGCGTATATTCCCTATAATTCACAATCCGCTCC
TGAAACCTGTGCCGACCATTCACCTCCTTTTTCTTACCCTTACGAAGACA
GTGTGGCTGCATGCCT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAGGCTGAGACAAGAGGATCACTTCTAGT
TCACAGCCACAATGTGAGTTCAAGACCAGCCTGACCTACATGGTGAGACT
CTGTCTCAAAGCACATAACAACAACAAAAAGATTGTTTAATGACAGTCTT
AAAAATTCATTGACAAGTGGGTAAAGAAACTGTGGCAATTTTTAAATGTT
ATTAATTTAGTTGAGTTGACGCTAGTGCTCGGCAGGCAGAGATAGTGGGA
TTTCTGTGAGTCAGAGGCCTTTCTGGTCTACAGCCACGGCTATATAAAGA
ATCCCTGTTTTAATTTTCCCCCCTCCCCCCCCCTAAAAGATTTAGAGTCT
CAAACCATGAACTGCCCAATGCACACAACTTTGTAATACTTGTGCGCGGC
GCCAATAACTAAGTCTAACAGCCAATAGGTTTGAGTCAAACAGCATGTAT
CTTTTCTCACTCTGCTACCAAACTTCTCACATCTGATTAAAACAATACTT
ACTGAACTACCTTTCCCGCTAGCCTTGAGTTCCATCCTTCCAGACCACGC
ACTTCTTACCCCCTGAAAACGTGCCCACAGTTGACCCACCCCCGTCAAGT
AGATACCCCAGGGGCTCCTCTAAATCAGTGAAACCCGTCGACGCCTTTTT
TTCACACCCGGCCAAGTCAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_j23.b1 MSMg01no087_j23.b1 CHROMAT_FILE:
MSMg01no087_j23.b1 PHD_FILE: MSMg01no087_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:49 2005
         (248 letters)



>mm_chr17_81015871_81016518
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtgcattttcttggttttcaatgctgtaagagatccaaatggaaagacggccacaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gatgtgcattttcttggttttcaatgctgtaagagatccaaatggaaagatggccacaac 260

                                                                       
Query: 61  tcccttttatttccatcagaaggtagacgggggtctaggcagccattggctggggatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttttatttccatcagaaggtagacgggggtctaggcagccattggctggggatggt 320

                                                                       
Query: 121 aagagtatacatacactgcacacagcagagtcgtggtctctcctactacaatgactgcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagtatacatacactgcacacagcagagtcgtggtctctcctactacaatgactgcgt 380

                                                                       
Query: 181 tctaacaaagccaaccgctcaaggggccttccatcacagcagggaagcaaactgtgaacc 240
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaacaaagccaactgctcaaggtgccttccatcacagcagggaagcaaactgtgaacc 440

                   
Query: 241 tgaaactg 248
           ||||||||
Sbjct: 441 tgaaactg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_j23.g1 MSMg01no087_j23.g1 CHROMAT_FILE:
MSMg01no087_j23.g1 PHD_FILE: MSMg01no087_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:49 2005
         (215 letters)



>mm_chr17_81170388_81171002
          Length = 615

 Score =  368 bits (190), Expect = e-106
 Identities = 205/210 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   aggctgagacaagaggatcacttctagttcacagccacaatgtgagttcaagaccagcct 63
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 511 aggctgagacaggaggatcacttctagttcacagccacattgtgagttcaagaccagcct 452

                                                                       
Query: 64  gacctacatggtgagactctgtctcaaagcacataacaacaacaaaaagattgtttaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gacctacatggtgagactctgtctcaaagcacataacaacaacaaaaagattgtttaatg 392

                                                                       
Query: 124 acagtcttaaaaattcattgacaagtgggtaaagaaactgtggcaatttttaaatgttat 183
           ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 391 acagttttaaaaattcattgacaagcgggtaaagaaattgtggcaatttttaaatgttat 332

                                         
Query: 184 taatttagttgagttgacgctagtgctcgg 213
           ||||||||||||||||||||||||||||||
Sbjct: 331 taatttagttgagttgacgctagtgctcgg 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)