BAC Information

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BAC

Clone NameMSMg01-088I17
Chromosome17 (Build37)
Map Location 52,749,850 - 52,750,221
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088I17.T7 (MSMg01no088_i17.b1)MSMg01-088I17.TJ (MSMg01no088_i17.g1)
ACCAG307271AG307272
length690799
length of high quality
(start - end)
368 (46 - 413)---
definitionCHROMAT_FILE: MSMg01no088_i17.b1 PHD_FILE: MSMg01no088_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:03 2005CHROMAT_FILE: MSMg01no088_i17.g1 PHD_FILE: MSMg01no088_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGCTTGCATTTTGTCAACTTTAACTGCAAAGAAGGAGCTGCCT
TCTATCTCACTAGGCTTTGAGCCGTGGTCAGAATAGACAGATGAGGACCT
GCACAGCATTCATGTAAACAAAACAAACAAACAAACAAAAAAACGTTTCT
TTTGGGTCTATCCTACAGAATCATTTCATAACAAATATAATCACAGACTC
CTAAGCCAAAGAAGTCTACTTTACTATGGATGGCAACTAGATGTGTCTAA
AATATTACTCTGGCCTTGGAGGAACTTGAGAATGTTTCACTTAAAAAACT
AAGTGTAGAACATAGACTCTATTGCAAGTCCAGGAAATGGGGCAAGCCAG
GCCTTCCCAGAGTTCACACCTGGATGCTGAACTGTGAATGCTTAGAAGAG
CTGATTAGAGAGATGAATAGGTTATTCTCAAAGCAGAGGGAGGCCCCTGT
TACCCTTAGAGATTTCTCAGAGGTGGGTCTTGAGGGTCACAGAGCATATT
TAGCTTTAAGTCGCCAAGGTTTGGTTGAGCAGTATGCTCAGGCTAAGTCT
GTCTGCATCCTGCAGAGGAGGTATGGCTTGAATTGTCCCGCAGAAGCATC
TTCCAAGCGTTAGCACAAAGCTAATATACCCATATAAGTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCNNNNCCNCCCCCCCC
NNCNNNTTGGCTCCCNNNTTTCGATGATGTGGGAGGCCTGGGGGCCGCCT
GTTTCTTATGCGAGAGGNNGAACNANAGAAGTTTCAGCGACGAGGGGGNG
NNGAACNCGGNACCCCANNNNNAAAAGAANAANNNATTTTTTTCCGGAGG
AAAGAGGGNNANCAAGNGGAGGGAAGAAAGAGNCGGCGAGGACAGAGCAA
AGGCAAACCCAAAAGGCCGCTAAACCCCCCCCACCCACCCCGCNCGGCAG
CCCGAGCGACCCAGCCCCACGANGTGTTTTTGACGCTTCCCTGTACTGGT
ACATATAAGGTTTGTAGGATCGAGGGGTCTCGCTTCTTTTTTTGTGTTTT
TCGAAGCGAGCGACGGCCGAAGAGGCAGCTTTTTTTTTTCCCCCCGGCCT
ACTGAGTTAGTTCATAGTTTTTGTTTATCTTATAAGGTTGCCACATAAAA
AAAAAAAAATAGAGAGTTGGGGGGGGTGGCTTAGTTGGTTGGCTTTGAGT
TTTGAGTTATAAGATGGAGTGTGTAGCTGTAACTTTCTGTAGTATGGTAG
TGTTGTGGTGTTAGTTTCTGTGTGTATAGAGGTATTGTAGTGGGTTTTGT
CGTGATTTGATTTTTCGTGACTAATTATATTAGGTTCTGGGGTTATGGAG
AGTTGGATTTGATTTGTGTGATTTGTAGGTCGGAGGGGATGGAGAGAGAG
GTAGGATTTTTTTTTTTTTTTTTTTAACGAGAGCGATGTTGAGATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_i17.b1 MSMg01no088_i17.b1 CHROMAT_FILE:
MSMg01no088_i17.b1 PHD_FILE: MSMg01no088_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:03 2005
         (368 letters)



>mm_chr17_52749501_52750268
          Length = 768

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/372 (96%), Gaps = 8/372 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagcttgcattttgtcaactttaactgcaaagaaggagctgccttctatctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattctaagcttgcattttgtcaactttaactgcaaagaaggagctgccttctatctca 662

                                                                       
Query: 65  ctaggctttgagccgtggtcagaatagacagatgaggacctgcacagcattcatgtaaac 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctaggctttgagttgtggtcagaatagacagatgaggacctgcacagcattcatgtaaac 602

                                                                       
Query: 125 aaaacaaacaaacaaaca-------aaa-aaacgtttcttttgggtctatcctacagaat 176
           ||||||||||||||||||       ||| |||||||||||||||||||||||||||||||
Sbjct: 601 aaaacaaacaaacaaacaaacaaacaaacaaacgtttcttttgggtctatcctacagaat 542

                                                                       
Query: 177 catttcataacaaatataatcacagactcctaagccaaagaagtctactttactatggat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catttcataacaaatataatcacagactcctaagccaaagaagtctactttactatggat 482

                                                                       
Query: 237 ggcaactagatgtgtctaaaatattactctggccttggaggaacttgagaatgtttcact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggcaactagatgtgtctaaaatattactctggccttggaggaacttgagaatgtttcact 422

                                                                       
Query: 297 taaaaaactaagtgtagaacatagactctattgcaagtccaggaaatggggcaagccagg 356
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaaaactaagtgtagaacaaagactctattgcaagtccaggaaatggggcaagccagg 362

                       
Query: 357 ccttcccagagt 368
           |||||| |||||
Sbjct: 361 ccttccgagagt 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)