BAC Information

Click to search

BAC

Clone NameMSMg01-089C10
Chromosome17 (Build37)
Map Location 59,758,141 - 59,758,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
Downstream geneLOC100043542, LOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C10.T7 (MSMg01no089_c10.b1)MSMg01-089C10.TJ (MSMg01no089_c10.g1)
ACCAG307723AG307724
length693702
length of high quality
(start - end)
492 (43 - 534)299 (74 - 372)
definitionCHROMAT_FILE: MSMg01no089_c10.b1 PHD_FILE: MSMg01no089_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:51 2005CHROMAT_FILE: MSMg01no089_c10.g1 PHD_FILE: MSMg01no089_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGACTATCCTAGGTATTGTAATATTTAGTTTCTTACATAAGTAAGGT
TCAAAGCACTATGACAAAATAAAGGTTCAGGAAAAAATTCCAGTTGATGT
ACCAGACAGAAGCTCTTGTTAGTGATAATGACCTTTTATCATTGTGTGCA
CATTTGAAATAGGACTCAATTTTATTTTCAGACTTTCAGTAATTATCTCA
GGTTTGAACCCACTATGCATCCCAGGCTGTGTTCAGAATTGCACTACCCC
TCCATCATTAGACTCCTGAGTGCTGCAATCAAACTAATGCACCATAATGC
CTGAAAACAGCCAGTTTCTCACATTTCTTTTAATCTTATGTCCTCTTGCC
CAGAGTCTAGTTTAAGAGATAGAGGTAAATGTGTTGTCTGATATTGTCCC
TTTTGAATTTCCCCTTTCATCAATTTTCTGCTTGAAGCATCATTGACAAT
TCATGAATTTCTGTTTGGACTAGGACATTTACAATGGTCATGCACACAAC
AGGACCAAGCTTGTGTCTCCAGACACATTACATTACAAATCTCCTGTATA
GCGTCAGATTGCTTTCCTTGGTATGCGTCCAGGAAATATAAGTAAACTTC
ATTATTCTTCGCATGTAAGCTTATGCGCACATGTGTGTGCGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTTGGAGATAGGGGGCGGGCATAGG
GAAGAGATATACGATGTGGAACAGTCAGAGGGCAGACCTGGAGGGGTATA
AATACTGGACTGTAGAAGATTAAAGAATAAAGAAAAGAAAAAAGAAGGAA
AGGAAAGAAAAGGAAAGGTAAGGTAAGGAAAGGAAAGGAAAGGACAGAAA
AGAAAAGAAAAGAAAAGAGAAAAGAAATCCAAACATCTAATTTAAATTTC
TACTGAAAAATAAAATAAGAACTAAAAATAGAAAGAAAATTGCTGTAGAA
GCGAAAAATCTATTTTCTCTCCCGCCCCCACTACTGGATATTTCAATCAT
ACTTCTGAGCGTGCTCCATGATCAAGAGTGATTGGCCAACACAAATTATA
CTTCATAATTTTTGTGTAATGTTGGGTTTGTTTTGAGAAAGGAAGAAAAT
TTCAATCCTAAACTACAGGGAATACTTTCCAAGGAAATTTAGGTCAATAC
ACTATACACATGCACACACACACACAGTACATACACCCGTGTATACTCAC
TTTCACTTCTTTGTTTATCGTGCCTGTATTTACCAGAGAATTTCACAAAA
TCATTTTTTCCATCTATCAATGCTGAGTGCCGCATAATACATTATACCTT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c10.b1 MSMg01no089_c10.b1 CHROMAT_FILE:
MSMg01no089_c10.b1 PHD_FILE: MSMg01no089_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:51 2005
         (492 letters)



>mm_chr17_59757630_59758521
          Length = 892

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Minus

                                                                       
Query: 112 agacagaagctcttgttagtgataatgaccttttatcattgtgtgcacatttgaaatagg 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 agacagaagctcttgttagtgataatgaccttttatcattgtgtgcacatttgaaatagg 833

                                                                       
Query: 172 actcaattttattttcagactttcagtaattatctcaggtttgaacccactatgcatccc 231
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 actcaattttactttcagactttcagtaattatctcaggtttgaacccactatgcatccc 773

                                                                       
Query: 232 aggctgtgttcagaattgcactacccctccatcattagactcctgagtgctgcaatcaaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aggctgtgttcagaattgcactacccctccatcattagactcctgagtgctgcaatcaaa 713

                                                                       
Query: 292 ctaatgcaccataatgcctgaaaacagccagtttctcacatttcttttaatcttatgtcc 351
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 712 ctaatgcaccataatgcctgaaaacagccagtttctcagatttcttttaatcttatgtcc 653

                                                                       
Query: 352 tcttgcccagagtctagtttaagagatagaggtaaatgtgttgtctgatattgtcccttt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 652 tcttgcccagagtctagtttaagagatagaggtaaatgtgttgtctgatattgccccttt 593

                                                                       
Query: 412 tgaatttcccctttcatcaattttctgcttgaagcatcattgacaattcatgaatttctg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgaatttcccctttcatcaattttctgcttgaagcatcattgacaattcatgaatttctg 533

                                
Query: 472 tttggactaggacatttacaa 492
           |||||||||||||||||||||
Sbjct: 532 tttggactaggacatttacaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)