Query= MSMg01no090_l06.b1 MSMg01no090_l06.b1 CHROMAT_FILE:
MSMg01no090_l06.b1 PHD_FILE: MSMg01no090_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:57 2005
(325 letters)
>mm_chr17_55466336_55467061
Length = 726
Score = 584 bits (302), Expect = e-171
Identities = 317/322 (98%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 5 gaattccagtttctca-ttctagggttgtttgagatggctcagtggtaaagcaatcccca 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtttcacaattctagggttgtttgagatggctcagtggtaaagcaatcccca 264
Query: 64 catgagtttgaatccccgtccccagtatacacttaaatctggaagtaatagtagacatta 123
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgagtttgaattcaggtccccagtatacacttaaatctggaagtaatagtagacatta 324
Query: 124 ataattccactagctataaagaagctcacgggccacctggcctagacaaactgcaaataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataattccactagctataaagaagctcacgggccacctggcctagacaaactgcaaataa 384
Query: 184 cagaagagcctgtttttaatatagtagaaggtaaggacttatgaggcatgagcattcaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaagagcctgtttttaatatagtagaaggtaaggacttatgaggcatgagcattcaca 444
Query: 244 caagtgtgcatggacaaatacaaagatttaaaacttgattttcaattattctatgtaggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagtgtgcatggacaaatacaaagatttaaaacttgattttcaattattctatgtaggt 504
Query: 304 tttgtcttgctttgttttggta 325
||||||||||||||||||||||
Sbjct: 505 tttgtcttgctttgttttggta 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 726
Length adjustment: 9
Effective length of query: 316
Effective length of database: 717
Effective search space: 226572
Effective search space used: 226572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_l06.g1 MSMg01no090_l06.g1 CHROMAT_FILE:
MSMg01no090_l06.g1 PHD_FILE: MSMg01no090_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:57 2005
(501 letters)
>mm_chr17_55611490_55612390
Length = 901
Score = 961 bits (497), Expect = 0.0
Identities = 500/501 (99%)
Strand = Plus / Minus
Query: 1 cttaaattaaaataaataaatgacctaaccagagatgggtaagtcccaatgtaaaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cttaaattaaaataaataaatgacctaaccagagatgggtaagtcccaatgtaaaaatca 642
Query: 61 caggagacatgataaactaaggcaacaatttaatcggagtgaatacaatgaaacttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caggagacatgataaactaaggcaacaatttaatcggagtgaatacaatgaaacttcaga 582
Query: 121 caaaagacacaaaagaatgattataaaaccttccaagaaatcaaacaggacaaaaataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaaagacacaaaagaatgattataaaaccttccaagaaatcaaacaggacaaaaataaa 522
Query: 181 cactagagtggattctaacacaaataaacatgtgaattaaatgagcaattcaatactgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cactagagtggattctaacacaaataaacatgtgaattaaatgagcaattcaatactgta 462
Query: 241 caggaaaatagaattcaataaagagatagaaataacaaacaaaaaagcaaactggtaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 caggaaaatagaattcaataaagagatagaaataacaaacaaaaaagcaaactggtaata 402
Query: 301 ctggaaatgaaaacatcaataatgccaactaaaaatgcacccccaaagtctgcatgggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctggaaatgaaaacatcaataatgccaactaaaaatgcacccccaaagtctgcatgggat 342
Query: 361 agtacagaaggggttccaaatgtgaagccttaaaaatagaaactcatttagagcatttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agtacagaaggggttccaaatgtgaagccttaaaaatagaaactcatttagagcatttag 282
Query: 421 tcagtgataaatgaaaattagcaaaacatattaacagagcattgaagatctatgatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 281 tcagtgataaatgaaaattagcaaaacatattaacagagcattgaagatctatgaaatat 222
Query: 481 gatggaaagaacatacctatg 501
|||||||||||||||||||||
Sbjct: 221 gatggaaagaacatacctatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
