Query= MSMg01no090_l18.b1 MSMg01no090_l18.b1 CHROMAT_FILE:
MSMg01no090_l18.b1 PHD_FILE: MSMg01no090_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:59 2005
(533 letters)
>mm_chr17_29204977_29205910
Length = 934
Score = 911 bits (471), Expect = 0.0
Identities = 510/529 (96%), Gaps = 11/529 (2%)
Strand = Plus / Plus
Query: 5 gaattcctgtcctgacttcctttggtgatgaacagcaatgtggaggtataagctgaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcctgtcctgacttcctttggtgatgaacagcaatgtggaggtataagctgaatag 275
Query: 65 aaaccctgactaagccacgggctccaacacaggttgtcatgcttggtcatgcttggttgc 124
|||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 276 aaaccctgactaagaca-gggctccaacacaggttgtcatgcttggt----------tgc 324
Query: 125 aagcacttttaccgatcttgctcaactctatttctcttgctaaccatgagtccctggccc 184
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 325 aagcacttttaccgatcttgctcaactcgatttctcttgctaaccatgagttcctggccc 384
Query: 185 cgtttatttttctattagacacccaccctctctatcgcctatgcttttttgttttgtttt 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 cgtttatttttctattagacacccaccctctctatcgcctatgcgtttttgttttgtttt 444
Query: 245 gagacacagaggacagccttaagcctgacgtgtagccaaggatgaccttgaactagttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagacacagaggacagccttaagcctgacgtgtagccaaggatgaccttgaactagttgg 504
Query: 305 acttctcgccttcaccaatcaagtgcagagatgctcagcgccatatcctttgcgtgtctt 364
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttctcgacttcaccaaccaagtgcagagatgctcagcgccatatcctttgcgtgtctt 564
Query: 365 tctgttccggcaagaggccagtgttaggcacatgagctcaaccagcactacactaggtta 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgttccgggaagaggccagtgttaggcacatgagctcaaccagcactacactaggtta 624
Query: 425 ctgaagcgcttgtcgtgccccctgcttctccacccctggcctctgggcttggcatgaaag 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgaagcacttgtcgtgccccctgcttctccacccctggcctctgggcttggcatgaaag 684
Query: 485 acaaggcgttaaccatgggagaataaaatgtcactctttgatgttgaac 533
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaaggcgttaaccatgggagaataaaatgtcactctttgatgttgaac 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space: 483252
Effective search space used: 483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_l18.g1 MSMg01no090_l18.g1 CHROMAT_FILE:
MSMg01no090_l18.g1 PHD_FILE: MSMg01no090_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:59 2005
(239 letters)
>mm_chr17_29302980_29303618
Length = 639
Score = 441 bits (228), Expect = e-128
Identities = 234/236 (99%)
Strand = Plus / Minus
Query: 1 agtgggaggtagaaagtgctctgcacaggcatcaggagatgcaggttctaggtccctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agtgggaggtagaaagtgctctgcacaggcatcaggagatgcaggttctaggtccctgtt 377
Query: 61 tgccttgaatctcctgagttactgtgggtgagtcatgttctttctgtgagtatcgctcct 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgccttgaatttcctgagttactgtgggtgagtcatgttctttctgtgagtatcgctcct 317
Query: 121 gccagagtttaagtgtggggcaagggacctgtcgggagggacattaggggacagtcccag 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 gccagagtttaagtgtggggcaaggaacctgtcgggagggacattaggggacagtcccag 257
Query: 181 ggacagcaggtgtccaaccccaagctgaaagagcaaaaggaactgcagaggggtga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggacagcaggtgtccaaccccaagctgaaagagcaaaaggaactgcagaggggtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
