BAC Information

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BAC

Clone NameMSMg01-092F23
Chromosome17 (Build37)
Map Location 83,166,234 - 83,166,803
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F23.T7 (MSMg01no092_f23.b1)MSMg01-092F23.TJ (MSMg01no092_f23.g1)
ACCAG310076AG310077
length681723
length of high quality
(start - end)
570 (76 - 645)38 (80 - 117)
definitionCHROMAT_FILE: MSMg01no092_f23.b1 PHD_FILE: MSMg01no092_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:12 2005CHROMAT_FILE: MSMg01no092_f23.g1 PHD_FILE: MSMg01no092_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGAAACCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAATATAACTAATGCTAGTTACTCTGGTTTGAAAATT
GTACATGATAACGCATAGTGAATTATCCTAACACTCTTCATCAATATGTA
TAAGTATTATTTGTTCACTAAAATTTAACTGAAGTATAAAAAAAGAGTAG
ATACAGTCCAGAAACAGGCAAGAAAACAAACACAAATGAACCATTCTAAC
ATGTCAAATCCTTTGTGGGTGGGAGTAAAAAAATCCCACCAGAACCCACA
GCACAGCATCACCTTATATGTGGCAATGAACTGGCAGTGTCTCTAACTAC
TTTTTTATTTATTATAAGTAGTACTTACTAGATTCTAGCCACTGTCAGGC
TCTGCACTAAGCATTAACCTCATGATGATGAGTAAGAGAAACTGTGGACA
TTTTAAAAGAAAATATATCCTTTGATTTAAAAGGGTTGACTCACTTCTCC
AGTATATAAAACAGTGGAATGTTAAGTGGAAACAAAACCCCACAGCAAAA
GCAATTGAATGCGGCATACAAAAATGTATATCAGTTATGTTGTGCTCTTT
AACCTGAAATTAGCACCACGGTTTAACAGCAGTGGACACATGACTCATTA
GGACCAAGAGAAGCTATAATTTTAAAAGAAA
NAACACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGGCTACACA
GAGAAACCCTGTCTCAAATTTCTCTCGAGAAGAAGTAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGATGA
AGATGAAGATGAAGATGATGAAGATGACGACCATGTAGGGGACCGGCGGA
GGACGAGGAGGAGGCGGAGGAGGAGTTTTGTTCCTCTCTCGTTCTCGCCC
CTCTGCCCCGGGGTTTTTTTTTTTTCCCCCCCCCCCCCCTTCCCGCTTTT
TGTTTTTTTCCTCCGTTTTCTTTCGCTACCCCAACAAAAAAAAATATTTT
TCGGGGGGGGCGGCGTTTTTTTCTTCCTCCTTCCCGCTTCCTTTTTTCTT
TTTTTCCGTTCCTCCCACGCGGCTTTCTCCTCTTCCTTTCTCCGCACTTA
GTTGCCCCCTCTTTATTTTTGCTTCCTCCCTTATTCTCTTGTGCATTCGG
TACCCTTCCTCGCTTCGCCTTTTCCTGTTCCCCTCCATCCTTCCGTCCCT
TTCTCTTTCTTTCTTCTTGCTTCTTTCTCTGCTCCTCTTTGCCCTTCCTT
TCTCTCTATTTTTTTCTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f23.b1 MSMg01no092_f23.b1 CHROMAT_FILE:
MSMg01no092_f23.b1 PHD_FILE: MSMg01no092_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:12 2005
         (570 letters)



>mm_chr17_83166034_83167003
          Length = 970

 Score = 1040 bits (538), Expect = 0.0
 Identities = 562/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctagttactctggtttgaaaattgtacatgataacgcatagtgaattatcctaacact 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 770 tgctagttactctggtttgaaaattgtacatgataacacatagtgaattatcctaacact 711

                                                                       
Query: 61  cttcatcaatatgtataagtattatttgttcactaaaatttaactgaagtataaaaaaag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctccatcaatatgtataagtattatttgttcactaaaatttaactgaagtataaaaaaag 651

                                                                       
Query: 121 agtagatacagtccagaaacaggcaagaaaacaaacacaaatgaaccattctaacatgtc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 650 agtagatacagtccagaaacaggcaagaaaacaagcacaaatgaaccattctaacatgtc 591

                                                                       
Query: 181 aaatcctttgtgggtgggagtaaaaaaatcccaccagaacccacagcacagcatcacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaatcctttgtgggtgggagtaaaaaaatcccaccagaacccacagcacagcatcacctt 531

                                                                       
Query: 241 atatgtggcaatgaactggcagtgtctctaactacttttttatttattataagtagtact 300
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 530 atatgtggcaatgaactggcagtgtctccaactacttttttatttattaaaagcagtact 471

                                                                       
Query: 301 tactagattctagccactgtcaggctctgcactaagcattaacctcatgatgatgagtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tactagattctagccactgtcaggctctgcactaagcattaacctcatgatgatgagtaa 411

                                                                       
Query: 361 gagaaactgtggacattttaaaagaaaatatatcctttgatttaaaagggttgactcact 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 gagaaactgtggacattttaaaagaaaatatatcatttgatttaaaagggttgactcact 351

                                                                       
Query: 421 tctccagtatataaaacagtggaatgttaagtggaaacaaaaccccacagcaaaagcaat 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 350 tctccagtatataaaacagtggaatgttaagtagaaacaaaaccccacagcaaaagcaat 291

                                                                       
Query: 481 tgaatgcggcatacaaaaatgtatatcagttatgttgtgctctttaacctgaaattagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgaatgcggcatacaaaaatgtatatcagttatgttgtgctctttaacctgaaattagca 231

                                         
Query: 541 ccacggtttaacagcagtggacacatgact 570
           ||||||||||||||||||||||||||||||
Sbjct: 230 ccacggtttaacagcagtggacacatgact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)