BAC Information

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BAC

Clone NameMSMg01-094H03
Chromosome17 (Build37)
Map Location 42,233,566 - 42,234,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLdha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H03.T7 (MSMg01no094_h03.b1)MSMg01-094H03.TJ (MSMg01no094_h03.g1)
ACCAG311616AG311617
length648687
length of high quality
(start - end)
495 (24 - 518)509 (55 - 563)
definitionCHROMAT_FILE: MSMg01no094_h03.b1 PHD_FILE: MSMg01no094_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:06 2005CHROMAT_FILE: MSMg01no094_h03.g1 PHD_FILE: MSMg01no094_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCAATATCTACCTGCCTTTGTTAAGCCAAACTATAA
ACTAGCTGCAGGCAGGACCCTGCCCTGACCTACCATTTCTACCAAGTCTG
GGCCTAATCTTGCTCTGTCCCAGGCTGACTTTGAACTCAGGAATCTGTCT
GCCTTTGTAAACATAAACCAAAAATGTATCTGGGTGAGCTCTTCTGTGAT
CACCATTTCCTACATCTCTTTATCACCTTCTTTAGTATATTTCTAAAGAG
CTAGCTCATAGTACAGCTGCTTTTGTTCTTTTAGATTCGTAAAGCCACTC
ATATAATTCATAGCACATCCTTATATTTTGCATAGTTGAGCAATTATATA
TTGTGAACTCATGTTTTTAGAGCCCTTTTCCACAGTCTTAAGGGCTGTCC
TAAAGTCCCAACATTTACCACTTTGCTGAGATATCAGCCAAACCTTTGCC
TCCCTGACTCATGCTGTCTCTGATTATTATGGAGTCATCAATGTTAACAG
GGAGGATATTCCTCAAAGGAGGAATGTGAAAATATGTACATTATTATGAA
AATAATCCTTAATACCATATCAGCTATCTACACTTATGGAGGTTCTGTTT
CAAGGTGGGAACCATGTCATTCCAGCCCTATTAAGGCCAGGCTGGATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATTGTCAGTTTTCAGTTGATTGAACCACACTTTATTAGATGTTCC
TTTTTATATAAAACACCCAGAGCCAGGCAGCCTTTAATCCCAGCACTTGG
GAGGCAGAGGCAGGTGGATTTCTAAGTTCAAGGCTAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAC
AAAACAAAACAAAACAAAACAAAACAAATCAAAACAACCAAACAACCAAA
CTAAACACCCAGAAATAGAGCCAGTGTTGAGATCTCAACTTCTATTTAAT
TGGCTGTAATGATCCTCTTTTTCTTAGCACATTATTAGCCTTACCTATAG
ATAATTATGATTATTGACTGAGAAATCCTTACTTAAAAGTACTGGAGCAG
CACCTCCAAATAAAATAATGTATAATAAATTATATCTTTTATTTCACTGG
TAATTCAATACATTTTCTTTAATTAATGTGAAAATGACTTAATTTTGTCA
ACTCTCTCTCAAAAACTTGGGGCGAATTTATCAATATAACTTTTCTAGCT
TAGTAAATTATAATTCGAACTCTTTCATCTTATTCTATCCAATTCTAAAA
TAAATAAATGGTAGCTTATTTTAAATACCTTCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h03.g1 MSMg01no094_h03.g1 CHROMAT_FILE:
MSMg01no094_h03.g1 PHD_FILE: MSMg01no094_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:06 2005
         (509 letters)



>mm_chr17_42233223_42234131
          Length = 909

 Score =  868 bits (449), Expect = 0.0
 Identities = 501/535 (93%), Gaps = 27/535 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtcagttttcagttgattgaaccacactttattagatgttcctttttatataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 cattgtcagttttcagttgattgaaccacactttattagatgttcctttttatataaaac 819

                                                                       
Query: 61  acccagagccaggc------------agcctttaatcccagcacttgggaggcagaggca 108
           ||||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 818 acccagagccaggcagtggtggtgcaagcctttaatcccagcacttgggaggcagaggca 759

                                                                       
Query: 109 ggtggatttctaagttcaaggctagcctggtctacaaagtgagttccaggacagccagga 168
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggtggatttctgagttctaggctagcctggtctacaaagtgagttccaggacagccagga 699

                                                                       
Query: 169 ctacacagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaaatca- 227
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 698 ctacacagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa 639

                                                                       
Query: 228 --------------aaacaaccaaacaaccaaactaaacacccagaaatagagccagtgt 273
                         |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 638 aacaaaacaaaaccaaacaaccaaacaaccaaacaaaacacccagaaatagagccagtgt 579

                                                                       
Query: 274 tgagatctcaacttctatttaattggctgtaatgatcctctttttcttagcacattatta 333
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 578 tgagatctcaacttctatttaattggcggtaatgatcctctttttcttagcacattatta 519

                                                                       
Query: 334 gccttacctatagataattatgattattgactgagaaatccttacttaaaagtactggag 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccttacctatagataattatgattattgactgagaaatccttacttaaaagtactggag 459

                                                                       
Query: 394 cagcacctccaaataaaataatgtataataaattatatcttttatttcactggtaattca 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagcacctccaaataaaataatgtataataaattatatcttttatttcactggtaattca 399

                                                                  
Query: 454 atacattttctttaattaatgtgaaaatgacttaattttgtcaactctctctcaa 508
           ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 398 atacattttctttaattaatgtgaaaatgacttaattttgttaactctttctcaa 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)