GTGTGTTTTTTTTTTTTTTTTTTGTTTTTTGTGTTTTTTGTTGGTGTGTT
TTTNTCCTTATTNNTCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCAGAGATCTACCTGCCTTTGTTAAGCAC
AAACTATAAACTAGCTGCAGGCAGGACCCTGCCCTGACCTACCATTTCTA
CCAAGTCTGGGCCTAATCTTGCTCTGTCCCAGGCTGACTTTGAACTCAGG
AATCTGTCTGCCTTTGTAAACATAAACCAAAAATGTATCTGGGTGAGCTC
TTCTGTGATCACCATTTCCTACATCTCTTTATCACCTTCTTTAGTATATT
TCTAAAGAGCTAGCTCATAGTACAGCTGCTTTTGTTCTTTTAGATTCGAA
AAGCCACTCATATAATTCATAGCACATCCTCACACCCTCGCACAGTTGAG
CAATTATATATTGCTGAACTCATGTTTTCACCACCCCACTTCCACAGTCT
TAAGGGCTGTCCCTAACGTCCCAACATTTACCCACTTTGCTGAAGATATC
AGCCAAACCCTTTGCCTCCTCTGACTCATGCCTGTCTCTGATTACTATGG
AACCCATCCCATGTTAACAGTGGAGGACATCTCCTCAAAGGAGGTAATGT
GCAAAACATGCCCCCTTATTCATGAATTCCTCCCTCTACCACCATATTAA
GCTATCTAACCCCTAATGGACGCTCCGGCCTCCACTTCGGCAACCAATGT
TATTTCAGCCCTTATT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTGTCAGTTTTCAGTTGATTGAACC
ACACTTTATTAGATGTTCCTTTTTATATAAAACACCCAGAGCCAGGCAGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTAAGTTCAA
GGCTAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACAGA
GAAACCCTGTCTCAAAAACAAAACAAAACAAAACAAAACAAAACAAAACA
AAACAACCAAACAACCATACAAAACACCCAGAAATAGAGCCAGTGTTGAG
ATCTCAACTTCTATTTAATTGGCTGTAATGATCCTCTTTTTCTTAGCACA
TTATTAGCCTTACCCACAGATAATTATGATTATTGACTGAGAAATCCTTA
CTTAAAAGTACTGGAGCAGCACCTCCAAATAAAATAATGTATAATAAATT
ATATCTTTTATTTCACTGGTAATTCAATACATTTTCTTTAATTAATGTGA
AAATGACTTAATTTTGTCAACTCTCTCTCAAAAATTTGGGGTGAATTTAT
CACTATAATTTTTCTAGCTTAGCAAATTAAAAATCGAACTCTTTCATCTT
ATTCTATCTAANTCATAAAATAATTATATGGTAGTTTATTTTAAACAC

Query= MSMg01no094_i03.g1 MSMg01no094_i03.g1 CHROMAT_FILE:
MSMg01no094_i03.g1 PHD_FILE: MSMg01no094_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:11 2005
         (541 letters)



>mm_chr17_42233238_42234178
          Length = 941

 Score =  909 bits (470), Expect = 0.0
 Identities = 531/568 (93%), Gaps = 27/568 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtcagttttcagttgattgaaccacactttattagatgttcctttttatataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cattgtcagttttcagttgattgaaccacactttattagatgttcctttttatataaaac 804

                                                                       
Query: 61  acccagagccaggc------------agcctttaatcccagcacttgggaggcagaggca 108
           ||||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 803 acccagagccaggcagtggtggtgcaagcctttaatcccagcacttgggaggcagaggca 744

                                                                       
Query: 109 ggtggatttctaagttcaaggctagcctggtctacaaagtgagttccaggacagccagga 168
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggtggatttctgagttctaggctagcctggtctacaaagtgagttccaggacagccagga 684

                                                                       
Query: 169 ctacacagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaaaaca- 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 683 ctacacagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa 624

                                                                       
Query: 228 --------------aaacaaccaaacaaccatacaaaacacccagaaatagagccagtgt 273
                         ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 aacaaaacaaaaccaaacaaccaaacaaccaaacaaaacacccagaaatagagccagtgt 564

                                                                       
Query: 274 tgagatctcaacttctatttaattggctgtaatgatcctctttttcttagcacattatta 333
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 tgagatctcaacttctatttaattggcggtaatgatcctctttttcttagcacattatta 504

                                                                       
Query: 334 gccttacccacagataattatgattattgactgagaaatccttacttaaaagtactggag 393
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gccttacctatagataattatgattattgactgagaaatccttacttaaaagtactggag 444

                                                                       
Query: 394 cagcacctccaaataaaataatgtataataaattatatcttttatttcactggtaattca 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagcacctccaaataaaataatgtataataaattatatcttttatttcactggtaattca 384

                                                                       
Query: 454 atacattttctttaattaatgtgaaaatgacttaattttgtcaactctctctcaaaaatt 513
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct: 383 atacattttctttaattaatgtgaaaatgacttaattttgttaactctttctcaataatt 324

                                       
Query: 514 tggggtgaatttatcactataatttttc 541
           |||||||||||||||| |||||||||||
Sbjct: 323 tggggtgaatttatcaatataatttttc 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)