BAC Information

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BAC

Clone NameMSMg01-094L06
Chromosome17 (Build37)
Map Location 39,212,264 - 39,212,577
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094L06.T7 (MSMg01no094_l06.b1)MSMg01-094L06.TJ (MSMg01no094_l06.g1)
ACCAG311799AG311800
length695712
length of high quality
(start - end)
319 (34 - 352)538 (74 - 611)
definitionCHROMAT_FILE: MSMg01no094_l06.b1 PHD_FILE: MSMg01no094_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:28 2005CHROMAT_FILE: MSMg01no094_l06.g1 PHD_FILE: MSMg01no094_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCTTCGCT
GAAATGAATTAAAGAAGATATCTTAGTTGAAGCAAGCAATGCATGGTACA
CAAAGGTTAAACAAAATATTAATTAAGTTTGGTCTACACAAGAAATAATA
TGTGACAAAAAATGTAAAAGGAAAACAATGGAAGTGTTACCATGTAGTGC
CACTGTAGTTTCATTTTGCCAACTTTACCTCTGATAAAGATGATATATAA
GCTATGGGACTTTACTGAACTATCAGTTGTGTACAAGAAATGAGAGAATT
CCTAATTTATTTCTGCACATGTCTGTTTGTCTTCAACAGGGAAATTTGCA
ACGTAAGAAAATTACCAACATTTCATCATGGCTTTTCACAGTATTATACC
ATTATTTGTTTTGCTATTCTTTGCTTATATCTTTCATTGATATTGGACAT
GAATCAGGGTACTATGATTGCAAGAGTTTTTTTACATAGATAGATACAAA
CACCTCAGAAAGCATTTGGTGAAGGACAATTATAAATTATGACAAATTTT
TCTAATGCTTAAATCAAATTTTACTTTGTTATTCAAGAAAAAATATAAGC
ACAATTCAAAATATGTATATATAATTTAAGCTCACTCAATCCATGCAATA
GAAAATAGGTGATTTTCTATGCTTCTTAAGATTTAACACTCACTA
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGTAATATTGAAGGGATTTTTGTG
TTCTCTTTTTAAGGGTACCTACCTGTTTACCTGTGTTTTCCTGTATATCC
TTAAGGGAGTCATTTGTGTCCTTCTTAAAAATCCTCTACCATCATTCTGA
GACATGATTTTAAATAGGAATCTTGCTTATCCTGTGTGTTGGGTTATCTA
GGACTTGCTGTGTCGGGAATACTAGGTTGTGGTAATGCCAAGTAGTCTTG
GATTCTTTTGATAAGACTCTTGAGTTTGCCTTTTGCTGGCTGTTAATGTC
TGGTGTTGGAAGTTCTTGCTGCCTCTGACTGGAGCTTGTTCCTTCTGTGA
ATATGTAAGCCTCTGTCAGCAGTCCTGGGATACAAGTTCTCTCCTGGCAA
GACAGAGAGCTGGGGAACTGCCCCACCCCTGGTACAATTTCAGGCAGGTA
GGACCCTGTCTAAGCTGCTGTGCTACTTATGTAGCCTATGCATTCTTGAG
TATCGATATGGGTCCCTGACTTNCATCTAATGGTTGGGTGTAAGTAACTG
CATCTATCTCAGTTAGCTTCTTGTAGAATGTCTCATATAACAGCCAAGTC
TCTAGCCACAACATTGCACCAGTATTTGTTGTCGGACTTAGTGCCTCACA
ACCCCCATGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_l06.b1 MSMg01no094_l06.b1 CHROMAT_FILE:
MSMg01no094_l06.b1 PHD_FILE: MSMg01no094_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:28 2005
         (319 letters)



>mm_chr17_39212059_39212777
          Length = 719

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttcgctgaaatgaattaaagaagatatcttagttgaagcaagcaatgcatggta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcgctgaaatgaattaaagaagatatcttagttgaagcaagcaatgcatggta 265

                                                                       
Query: 66  cacaaaggttaaacaaaatattaattaagtttggtctacacaagaaataatatgtgacaa 125
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacaaaggttacacaaaatattaattaagtttggtctacacaagaaataatatgtgacaa 325

                                                                       
Query: 126 aaaatgtaaaaggaaaacaatggaagtgttaccatgtagtgccactgtagtttcattttg 185
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaatgtaaaaggaaaacgatggaagtgttaccatgtagtgccactgtagtttcattttg 385

                                                                       
Query: 186 ccaactttacctctgataaagatgatatataagctatgggactttactgaactatcagtt 245
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaactttgcctctgataaagatgatatataagctatgggactttactgaactatcagtt 445

                                                                       
Query: 246 gtgtacaagaaatgagagaattcctaatttatttctgcacatgtctgtttgtcttcaaca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgtacaagaaatgagagaattcctaatttatttctgcacatgtctgtttgtcttcaaca 505

                         
Query: 306 gggaaatttgcaac 319
           ||||||||||||||
Sbjct: 506 gggaaatttgcaac 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)