Query= MSMg01no095_a22.b1 MSMg01no095_a22.b1 CHROMAT_FILE:
MSMg01no095_a22.b1 PHD_FILE: MSMg01no095_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:57 2005
(564 letters)
>mm_chr17_92098499_92099462
Length = 964
Score = 1019 bits (527), Expect = 0.0
Identities = 545/559 (97%), Gaps = 13/559 (2%)
Strand = Plus / Plus
Query: 6 aattcatttttacatttattgtcaagtaggggacatggttaggcatctttgaacttttct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aattcatttttacatttattgtcaagtaggggacatggttaggcatctttgaacttttct 278
Query: 66 gctttagtcaataccttgctgagactgagcttctttttgtaccattacaaatagattact 125
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gctt-------------gctgagactgagcttctttttgtaccattacaaatagattact 325
Query: 126 ctttcttgtgttaatattattgtaaaatattaacaccaattttcatgtaaactgcttagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttcttgtgttaatattattgtaaaatattaacaccaattttcatgtaaactgcttagt 385
Query: 186 tccagttatttgtttatatatgtaagagaaataattgcattttactgttctaatgtatat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccagttatttgtttatatatgtaagagaaataattgcattttactgttctaatgtatat 445
Query: 246 tcattctacaaaaagaacattcagagaaatctgtcacgtatcatgtctgaggaataatat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcattctacaaaaagaacattcagagaaatctgtcacgtatcatgtctgaggaataatat 505
Query: 306 gctaaaatcaactgattcacctattaagtatttgctgaatgtctagagtttttccacatc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gctaaaatcaactgattcacctattaagtatttgctgaatgtctagagtttttccacatc 565
Query: 366 taaataatagagatttcatgtgaataggatggaaagaaaagttctttattctcaaaaggt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaataatagagatttcatgtgaataggatggaaagaaaagttctttattctcaaaaggt 625
Query: 426 ttatactacatagactgaagataaatgcttgttaagcaaagatgcagctgcttcaatttc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttatactacatagactgaagataaatgcttgttaagcaaagatgcagctgcttcaatttc 685
Query: 486 aaatattaaaagtaaaacaaggaatttataaaagaagagaataagttactgcagcaggaa 545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 686 aaatattaaaagtaaaacaaggaatttataaaagaagagaataagtcactgcagcaggaa 745
Query: 546 gaatgctttgaacagcagg 564
|||||||||||||||||||
Sbjct: 746 gaatgctttgaacagcagg 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_a22.g1 MSMg01no095_a22.g1 CHROMAT_FILE:
MSMg01no095_a22.g1 PHD_FILE: MSMg01no095_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:57 2005
(281 letters)
>mm_chr17_92252775_92253456
Length = 682
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 1 tctctgtcaatgttgcttgcttctttctgatc-aaaaccattattaagaatttggggtat 59
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 482 tctctgtcaatgttgcttgcttctttctgatcaaaaaccattaataagaatttggggtat 423
Query: 60 cttgatgaaaaaaacgttatcaagaattttgtaatttcattaccttctaatatccccact 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttgatgaaaaaaacgttatcaagaattttgtaatttcattaccttctaatatccccact 363
Query: 120 ctctgaatggtttccgtggttttttgatgctatcatttctatatgattgatatccacatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctctgaatggtttccgtggttttttgatgctatcatttctatatgattgatatccacatt 303
Query: 180 attcttggaatgtatacattttcaaattctattcctagcatataaaatatgtagataaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 attcttggaatgtatacattttcaaattctattcctagcatataaaatatgtagataaat 243
Query: 240 aaatgaataacaaataaacacatgaaccctagtactaaactc 281
||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 242 aaatgaagaacaaataaacacatgagccctagtactaaactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
