BAC Information

Click to search

BAC

Clone NameMSMg01-095B20
Chromosome17 (Build37)
Map Location 43,467,170 - 43,467,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
Downstream geneGpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095B20.T7 (MSMg01no095_b20.b1)MSMg01-095B20.TJ (MSMg01no095_b20.g1)
ACCAG312106AG312107
length700700
length of high quality
(start - end)
564 (31 - 594)286 (56 - 341)
definitionCHROMAT_FILE: MSMg01no095_b20.b1 PHD_FILE: MSMg01no095_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:02 2005CHROMAT_FILE: MSMg01no095_b20.g1 PHD_FILE: MSMg01no095_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATGCAGAGGATCCGCGGAATTCTTTGTT
CATTGCCCCACATTTTCATGATTGTCTATGGCTGTACCTATATGACAAGA
GAGTTAAATTGTTCCCACAGGAATCCTATGACCTCCTGTGGCTTGAAATA
TTTTCTGACTTTCCATAGAAAAGGTTTAGGGAATTATAGAAATGTCCCAG
TGGTTAGTTAAGAGTGTTTGTTGCTTGTGATGGGTAATCTTGGTTGTCAA
CTTGTCTACATCCGAAATCCATTCAAACCCAAGCCTCTGAATATAACCTG
TAAAAGGGTATTTCGATTGGATCATTCAGGGTCAGAAGGCCCACCATGTC
TGGGTCACAATTTCTAGCGGCATCCCACATACAAAGAAATGGAAGAAGGA
AACCTTTGCCTGCTTGACCTCTCAACAGCAAGTTCGTTTATTCTACTGCG
AGACATCACTTTACTTAGTATTAGAGACTCACTTCTTCCAGACTTCAGTG
TAGACTGAAGAACAACTGAGATATCCAGCTTCACGGACTGAATAGCTACT
GAATTATTGTCCTTTCCATTAGGAGGCAGCCATTCTTGGATTAGCAAGAT
CACAGCCCATAAGCAATTCTAAAATATCCCCTTCATTGAATCTTTCTTTC
TTCCTCCCTCTTTGTATCTTTATACCATCTATCCTGTCTGTCTGTCTGTC

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATAACAAACACACTGCCAGGCTCTGCCAAGGATAACTGTGCTGT
CTGAGAGCCTCACCTGGTGCTGGCGATAATGTGACTCAGTTTTCCTGGAG
TCAGCTTGGCCAGGGACTAGCTCCATCTACCATCTCTTTCACCAGAGTGA
GAGAATGTTACCCAGGCACCCACCCTTGCTTCTGAATTTGAAAGGAATGA
TAAAGAGGCACGGTCAGACTTTGTTTTGACCATTGTTGAGATGTTAGAGT
CTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGC
CACCCCCCCCCCCCTTTTTTTTTCTCTACTCTCTCCTATTTTCCCCCCCC
AAAAAAAAAAATTAAAAAGTTCGGCGTGGGGGGCCATCTTTGCCCTCCTG
GCTCTGCAGCCTCCCTTGCCACCCGTTGCCTCCTGGCTCCCTTTGGTCCC
GTTTCCCCCCACCTCTTTTAACACAACTCTTTTCATTTTTTCTCCCGCTT
CCCCCCCCCCCCTCCCTTATTTTTCCCTTCCGCCACTCCTTATTCTACTC
CCTTCTCTAACCCCCGCTCCCCCCCTCCTACGTCCTCCTCCTCACCCTCT
ATAACGTTCCACGCATCTACAGTCCTTTTTCCTGTTTTTCATTTTGTCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_b20.g1 MSMg01no095_b20.g1 CHROMAT_FILE:
MSMg01no095_b20.g1 PHD_FILE: MSMg01no095_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:02 2005
         (286 letters)



>mm_chr17_43466970_43467655
          Length = 686

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataacaaacacactgccaggctctgccaaggataactgtgctgtctgagagcctcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataacaaacacactgccaggctctgccaaggataactgtgctgtctgagagcctcacct 260

                                                                       
Query: 61  ggtgctggcgataatgtgactcagttttcctggagtcagcttggccagggactagctcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ggtgctggcgataatgtgactcagttttcctggagtcagcttggccagggactagcccca 320

                                                                       
Query: 121 tctaccatctctttcaccagagtgagagaatgttacccaggcacccacccttgcttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaccatctctttcaccagagtgagagaatgttacccaggcacccacccttgcttctga 380

                                                                       
Query: 181 atttgaaaggaatgataaagaggcacggtcagactttgttttgaccattgttgagatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgaaaggaatgataaagaggcacggtcagactttgttttgaccattgttgagatgtt 440

                                                        
Query: 241 agagtctgagagagagagagagagagagagagagagagagagaga 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtctgagagagagagagagagagagagagagagagagagaga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)