BAC Information

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BAC

Clone NameMSMg01-095F04
Chromosome17 (Build37)
Map Location 81,134,145 - 81,296,137
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
Downstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F04.T7 (MSMg01no095_f04.b1)MSMg01-095F04.TJ (MSMg01no095_f04.g1)
ACCAG312264AG312265
length761787
length of high quality
(start - end)
282 (124 - 405)278 (157 - 434)
definitionCHROMAT_FILE: MSMg01no095_f04.b1 PHD_FILE: MSMg01no095_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:18 2005CHROMAT_FILE: MSMg01no095_f04.g1 PHD_FILE: MSMg01no095_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,134,145 - 81,134,422)(81,295,860 - 81,296,137)
sequence
CCCCTTTTNNNNNNNNNNTTTTCTTTTTNCCCNCCTNCTTTTCCTTTTAC
NTATACCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
CCGCGGAATTCCAGGCTTGTCGAGAAGAGAGGGCAGGCAGAGCTTGGGTA
GAATGCAGGCTTCTGGCTTGGGTAATGACGAAACGTGGTATCAGTATTGA
CACTTGCCGTGACAAGAGGAACTGGTGTTTGGGGGAGGGCTCTAACACCA
GATCAAAGTGGGTGATTGTGCTCCCTATCTGTTGAGCTGGAGGTGCTCAA
CTGGAAATGATGCGTGAGAACTATGTGGGTCTGATACATAGAAAAGATCT
CTGACGAGATTGGTAGTCACTTACAAAGATTCTGAACATCATGAAGACAT
AGTGGGCCAGACTCTCTAATATCTGACCATACCTCTTTTTCAAACTGGGA
CGCTTTATATCTTTTTCCTTACACCATTATGCTTATTGCTTATTTACTGG
TGATACCATGTGTTTCACCGGTAGAAAAACTTGCTTTACTATGCCTGCTT
CTCTGCGCTTTGTCGATATACTTGACTTACTTACCATCCTGTACTTGCTT
GTTTATTTCTTGCCACTTTAACATTCTAGAAGATTTGATCCAGATTCATC
ACCCCCCATTATTTCATAGCCCCCTTGTTTTGTATGTTTTCATTTCACTC
CTTTAACCTGTATGAAACTTTATTTTCCAAACCATATCCTTACCTATTCT
ATATTTTTTTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCCCCCCCNCCCCTTTTTTTNNTTTTTCTATGAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTTGTCTATTTGTCCCTTAGCAACAGGTCTCAACTGAACAAC
TCCTAAACGACTCCTGCTGAGAGGCTGAGGCTGAGCCAGTGAATGTCTGT
GCCTGGGTGAGATTAGTTCACTTAGTAGTCTGGAGACAGGCTTAAAACAT
TGGGTTCCAGTCACATCTGCTACCTATCTCTCCCACCTCCTAGCCTCTGT
CCCATTCGGCCCATGTGGAATATGGCCATGGTGTTTGCAGGTCCCTGGGC
TGTCTGATTATCTGATCCACAACAGCCACAGATCACTCTCTTTTGTGACC
ACCCCCCCACGCATCTCTTAATGAAGTCACAAGCTACTTCCTCCCTGCTT
TCAGAGGAACCAATTTATACAGAAGCTTTTTCTTTCCTTGAAAGACATGC
AAGAAGGCAGACCACATCTTGAAATTTTAATGACTCCCTCTAAAGCTCTA
ATCTCAGCAGGAACCCGATCTATTTGTACAGAAACAAGAGGTGAACTATT
AATATCACATGTATTCATAAAGCATGCTCAGCGATCGTTGATTCTTATTG
CCCCCAAAAGGAATTGACCCTATTATGTCACACTTATACTCCCTCTTTGT
AATGACGCCCTTCTATTTATGGAATTATCTCCCGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f04.b1 MSMg01no095_f04.b1 CHROMAT_FILE:
MSMg01no095_f04.b1 PHD_FILE: MSMg01no095_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:18 2005
         (282 letters)



>mm_chr17_81133941_81134622
          Length = 682

 Score =  476 bits (246), Expect = e-139
 Identities = 270/278 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   agagggcaggcagagcttgggtagaatgcaggcttctggcttgggtaatgacgaaacgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 205 agagggcaggcagagcttgggtagaatgcaggcttctggcttgggtaatgaggaagcgtg 264

                                                                       
Query: 65  gtatcagtattgacacttgccgtgacaagaggaactggtgtttgggggagggctctaaca 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatcagcattgacacttgccgtgacaagaggaactggtgtttgggggagggctctaaca 324

                                                                       
Query: 125 ccagatcaaagtgggtgattgtgctccctatctgttgagctggaggtgctcaactggaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagatcaaagtgggtgattgtgctccctatctgttgagctggaggtgctcaactggaaa 384

                                                                       
Query: 185 tgatgcgtgagaactatgtgggtctgatacatagaaaagatctctgacgagattggtagt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tgatgcgtgagaactatgtgggtctgatacatagaaaagatctctgacgagattgggagt 444

                                                 
Query: 245 cacttacaaagattctgaacatcatgaagacatagtgg 282
           |||||| |||||  |||||||||| |||||||||||||
Sbjct: 445 cacttagaaagacgctgaacatcaggaagacatagtgg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no095_f04.g1 MSMg01no095_f04.g1 CHROMAT_FILE:
MSMg01no095_f04.g1 PHD_FILE: MSMg01no095_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:18 2005
         (278 letters)



>mm_chr17_81295660_81296337
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttgtctatttgtcccttagcaacaggtctcaactgaacaactcctaaacgactcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttttgtctatttgtcccttagcaacaggtctcaactgaacaactcctaaacgactcctg 419

                                                                       
Query: 61  ctgagaggctgaggctgagccagtgaatgtctgtgcctgggtgagattagttcacttagt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 ctgagaggctgaggctgagccagtgaatggctgtgcctgggtgagattagttcacttagt 359

                                                                       
Query: 121 agtctggagacaggcttaaaacattgggttccagtcacatctgctacctatctctcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtctggagacaggcttaaaacattgggttccagtcacatctgctacctatctctcccac 299

                                                                       
Query: 181 ctcctagcctctgtcccattcggcccatgtggaatatggccatggtgtttgcaggtccct 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 298 ctcctagcctctgtcccattcggcccatgtggaatatggtcatggtgtttgcaggtccct 239

                                                 
Query: 241 gggctgtctgattatctgatccacaacagccacagatc 278
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 238 gggctgcctgattatctgatccacaacagccacagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)