Query= MSMg01no095_j10.b1 MSMg01no095_j10.b1 CHROMAT_FILE:
MSMg01no095_j10.b1 PHD_FILE: MSMg01no095_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:39 2005
(483 letters)
>mm_chr17_63737940_63738822
Length = 883
Score = 787 bits (407), Expect = 0.0
Identities = 453/479 (94%), Gaps = 18/479 (3%)
Strand = Plus / Minus
Query: 5 gaattctatatatcaccaactattttactgaaatacagatgtatattatatatattcgaa 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattctatatagcagcaactattttactgaaatacagatgtatattatatatattcgaa 803
Query: 65 atatttttaactagccaaatattctgaatatagtagaatgctatacagcagtaacaattc 124
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 802 atatttttaactagtcaaatattctgaatatagtagaattctatacagcagtaacaattc 743
Query: 125 tactgaaatagcatgtataatatatgtatatatatatatatacacacacatacacacaca 184
|||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 742 tactgaaatagcatgtataatata--tatatatatatatat----------------aca 701
Query: 185 catatatggataaatatcaaaaacattttactggggaaagaatcacccaaagggccactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 catatatggataaatatcaaaaacattttactggggaaagaatcacccaaagggccactc 641
Query: 245 atgatgcaattgagttataaggctgctaggaaaggcagaggtataaagacagaaaccatg 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 640 atgatgcaattgagttataaggctgctaggaaaggcagaggtatagagacagaaaccatg 581
Query: 305 ttggcagtactggtcagagctttggcagggaactatggttgattacgtatgggagctaaa 364
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 580 ttggcagtactggccagagctttggcagggaactatggttgattacgtatgggagcaaaa 521
Query: 365 ggataaaggagattggttatatactggtattaccttgataaacatgtgagctgcactcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggataaaggagattggttatatactggtattaccttgataaacatgtgagctgcactcaa 461
Query: 425 ctatactatttcactttttaaaacaaagtgcatttattcatctaagagggtacattttg 483
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 460 ctatactatttcactttttaaaacaaagtgcatttattcatctaagaggatacattttg 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_j10.g1 MSMg01no095_j10.g1 CHROMAT_FILE:
MSMg01no095_j10.g1 PHD_FILE: MSMg01no095_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:39 2005
(295 letters)
>mm_chr17_63575617_63576311
Length = 695
Score = 542 bits (280), Expect = e-158
Identities = 292/296 (98%), Gaps = 2/296 (0%)
Strand = Plus / Plus
Query: 1 agtgaattttaaaaataatgatcatccacactagctgttccaaagctc-gccctgctcta 59
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 agtgaattttaaaaataatgatcatccacactagctgttccaaagctcag-tctgctcta 259
Query: 60 acatcagcaagctgtactgacagaatcgcaggcatgggtgcccttcaatgcagcccctgg 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaacagcaagctgtactgacagaatcgcaggcatgggtgcccttcaatgcagcccctgg 319
Query: 120 ttaatctgtatagatagcagttaagctaaagggtaaaaagcaaaaggagtcattaacctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaatctgtatagatagcagttaagctaaagggtaaaaagcaaaaggagtcattaacctt 379
Query: 180 ttctaggaagtgaggttcaagcaatttgatacctgtgtgtacaatccatcaaaactcact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttctaggaagtgaggttcaagcaatttgatacctgtgtgtacaatccatcaaaactcact 439
Query: 240 cagcatccatctctgtctttcagatatttcatttgctgtctggcttatttgtaggg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagcatccatctctgtctttcagatatttcatttgctgtctggcttatttgtaggg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
