Query= MSMg01no096_k01.b1 MSMg01no096_k01.b1 CHROMAT_FILE:
MSMg01no096_k01.b1 PHD_FILE: MSMg01no096_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:03 2005
(473 letters)
>mm_chr17_89227925_89228799
Length = 875
Score = 797 bits (412), Expect = 0.0
Identities = 457/478 (95%), Gaps = 13/478 (2%)
Strand = Plus / Plus
Query: 1 gacattaaaataaagttggtttgaattatcagcttgtacccagtgtggctgcaattttaa 60
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 201 gacattaaaataaagttggtttgaattatcagcttatacccagtgtggctggaattttaa 260
Query: 61 gaattccatttgttagaattgaattctagcacttgttagaattgaattctttcttcaggc 120
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 261 gaattccatttgttagaattggattgtagcatttgttagaattgaattctttcttcaggc 320
Query: 121 tatttttt-gcctctgatggtgtgtccctgtgaatctgctgatatgtttgaaattcatgc 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 321 tatttttttgcctctgatggtgtgtccctgtgaatctgctgatatgtttgaatttcacgc 380
Query: 180 agtgatatggatcacagaaaaaaaa-tggggtcagaaaagtaccttctgagtcaccacat 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgatatggatcacagaaaaaaaaatggggtcagaaaagtaccttctgagtcaccacat 440
Query: 239 aattaagtaatatcatttctctaagaaataatacttcgttcattctggaatagaggccac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaagtaatatcatttctctaagaaataatacttcgttcattctggaatagaggccac 500
Query: 299 agtcctattcagatacctactctaatatttgtcctctgtttctctatcatgtaaacattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcctattcagatacctactctaatatttgtcctctgtttctctatcatgtaaacattt 560
Query: 359 gaagttgtcattggaaaccagacaactcttaacagattctctttgtctatctgaacagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagttgtcattggaaaccagacaactcttaacagattctctttgtctatctgaacagtt 620
Query: 419 ttttttaa---tttgtttgtttgtttgtttgctttgagacaggctctctctgtgtagc 473
|||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 621 ttttttaaaaatttgtttgtttgttt--------tgagacagggtctctctgtgtagc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space: 400495
Effective search space used: 400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_k01.g1 MSMg01no096_k01.g1 CHROMAT_FILE:
MSMg01no096_k01.g1 PHD_FILE: MSMg01no096_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:03 2005
(378 letters)
>mm_chr17_89304509_89305286
Length = 778
Score = 692 bits (358), Expect = 0.0
Identities = 373/378 (98%)
Strand = Plus / Minus
Query: 1 agagactgttgatattactctaagcatctttttttaattctgtggtttacgctggtccag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 578 agagactgttgatattactctaagcatctttttttaattctatggtttacgctggtccag 519
Query: 61 agctcatcatttggaaagatcagccatgagcaaagggtgaagggctctggaaaagcaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agctcatcatttggaaagatcagccatgagcaaagggtgaagggctctggaaaagcaata 459
Query: 121 gttacaaaaagaaaactaccataaaggttctgtaggctggagaacaacatgtttgtatag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 458 gttacaaaaagaaaactatcataaaggttctgtaggctggagaacaacatgtttgtacag 399
Query: 181 cctggagcagaaggaaaaggaggtgtgcacagtgtagaggtggtgaaatgtgacatggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cctggagcagaaggaaaaggaggtgtgcacagtgtagaggtggtgaaatgtgacatggac 339
Query: 241 agactcacatcaaatgtgaccttccaagccacattcttgtggggttcctgagattgattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agactcacatcaaatgtgaccttccaagccacattcttgtggggttcctgagattgattt 279
Query: 301 acaagatgggcaaaggtgaacttaaccatgctctacacacagaccactgctggcaaaacc 360
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 278 acaagatgggcaaaggtgaacttaaccatgctctacacacagaccacgggtggcaaaacc 219
Query: 361 atgctctacacacagacc 378
||||||||||||||||||
Sbjct: 218 atgctctacacacagacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
