Query= MSMg01no096_m09.b1 MSMg01no096_m09.b1 CHROMAT_FILE:
MSMg01no096_m09.b1 PHD_FILE: MSMg01no096_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:15 2005
(243 letters)
>mm_chr17_86125101_86125743
Length = 643
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%)
Strand = Plus / Plus
Query: 1 ggatccactggagttagaccacagcggcagtgcaggctttgtgatttcaccataccagac 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ggatccactggagttagaccacagcggcagtgcaggctttgtgatttgaccataccagac 260
Query: 61 cagagtttttaagctaaattcagccaattacaactggggcgttccacacataacttcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagtttttaagctaaattcagccaattacaactggggcgttccacacataacttcatg 320
Query: 121 ggctctctgtatcagtcgcacgcacacacgctctctatggattggttatctggggccgag 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ggctctctgtatcagtcgcacgcacacaagctctctatggattggttatctggggccgag 380
Query: 181 ggcaaggtctgtggaatcatccccactcatgcttgggcagcaggcatgagttgttcttat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaaggtctgtggaatcatcccaactcatgcttgggcagcaggcatgagttgttcttat 440
Query: 241 ca 242
||
Sbjct: 441 ca 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_m09.g1 MSMg01no096_m09.g1 CHROMAT_FILE:
MSMg01no096_m09.g1 PHD_FILE: MSMg01no096_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:15 2005
(289 letters)
>mm_chr17_86253756_86254442
Length = 687
Score = 524 bits (271), Expect = e-153
Identities = 284/289 (98%), Gaps = 2/289 (0%)
Strand = Plus / Minus
Query: 1 cattaggcacgggaccagtcctctaacggtgcctgttctgggggagggcaggattctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cattaggcacgggaccagtcctctaacggtgcctgttctgggggagggcaggattctggg 428
Query: 61 aatcctctccaccgaagctttttttcctcagacctccctcccgactcactggactctttg 120
|||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct: 427 aatcctctccgccgaagccttttctcctcagacctccctcccgactcactggactc--tg 370
Query: 121 cttccttttctttcattctcatggacaagaactatttccatctctctagtaggatgcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttccttttctttcattctcatggacaagaactatttccatctctctagtaggatgcctc 310
Query: 181 ttccacacttatggccacttgccactttgagatgtaacctgacttagaagtaagttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttccacacttatggccacttgccactttgagatgtaacctgacttagaagtaagttgttt 250
Query: 241 gaagcgttagtaactaagagatcttgagttgaaattgtaggtgcttaga 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaagcgttagtaactaagagatcttgagttgaaattgtaggtgcttaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space: 189840
Effective search space used: 189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
