BAC Information

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BAC

Clone NameMSMg01-096N24
Chromosome17 (Build37)
Map Location 4,224,623 - 4,224,914
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096N24.T7 (MSMg01no096_n24.b1)MSMg01-096N24.TJ (MSMg01no096_n24.g1)
ACCAG313447AG313448
length748729
length of high quality
(start - end)
292 (73 - 364)66 (77 - 142)
definitionCHROMAT_FILE: MSMg01no096_n24.b1 PHD_FILE: MSMg01no096_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:24 2005CHROMAT_FILE: MSMg01no096_n24.g1 PHD_FILE: MSMg01no096_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGACTTTTACTGTAAAAACAAAGGACTTTAGAGACCTCCCCT
TCTTGAGAGCTTAGTGATATGCTAGTCCCTCACTTTAGCATTCACTGTGC
TGTGGTAAACTCCTCTCCTAAGGACTATCTCATGACAGAGAACTTTCCAG
TCTCATGCAACACATGGACTACGAACATTGAATTATCAGTTTTTACATAG
AGCATCCACGCAACCATGTTGTTTATCTATTTGACCTCTCAAACGCAGAG
CAGCTTCCTGCCTCATTTAGTCACCAAGCACTCCTTGGCCACATACTAGG
TGCCAGGCATTGTTCTAGGGACTACGGACAGAACAGGGAATAAGACAGGT
ATACTTCATGTCCTTGCCCCCTTTATATGCTACTATCAGAAGACGGCGCA
ACCATGCATGACATTGATAAAGGAAGACATAATTACTCCGCTCTTTACAT
AGTGAACGCACAAGTGTCCATTGACCACGCTGCCACAGGTGTTTTACGCT
TAAATAACGTGCCCGACAACGTGATACATACCCTCAGACTACCATTATAC
GAGCTGTCTATGCACAGTGCCTCCGTACGATCTTATTCCTATGACCCGAT
AGCGATTTCGCATTACCCTCTTACCTCCCTTCCTGCAAACCCCCCCTTCT
CGCCCCTCGATACGCTCCCCTCCATTCCCCCTCCCGACAGTCCTCAGC
CCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGTTCCCTTGGGTTTATAAA
GAAGGAAAGAAAAGGGATGGAAACTACCTTCTTGTTTTAGTGACATTCCT
AAGAAAAGTATCTATGTACCCATGCCTGAGGGCCTCTCCTGGGAATCTCA
GTATGGGTGTGCAATTTGTGCACCAGTTTAGAGTCATGGTTATTCTTGGC
GCCACCTTACCATATTATTATACTGGCTTGTGTTGCAGCTAGCAGTGAGT
TAGCCCTCTGTGACATGATATAGAATTATGCATCAACATCAACTTGTATG
TTAAACATAAATTCCTTGGAGTTTTACAGGACTAAAGTAAAGCTCGAAGA
TTCCTACTGAAAGAACGCCCCCCTTTATGCCCTATTTCAGATTTGGGGTT
ATTTTCATTTAAGTATACTCTGAAATCTCTTCACCGTCCTATTTATTGAA
TACCATATGCTACCACTTACACGTTCCAACTATTTACTGCCCCTGTATAT
CACCTCCCTACGCTGTAATACTTACAATTGCCCCCCTTCTTAGCACCCAC
CATGCGCATTACTCATAACCATATTAACCCCTAGCACGCTTTTGCACTAT
TATTCCGTTCCCCTTCAGCGCATATGCCCCCCTACCTTCCTTAACTCCCT
TCCCCTTTTTCCCCCCCGTCTTCCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_n24.b1 MSMg01no096_n24.b1 CHROMAT_FILE:
MSMg01no096_n24.b1 PHD_FILE: MSMg01no096_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:24 2005
         (292 letters)



>mm_chr17_4224477_4225168
          Length = 692

 Score =  511 bits (264), Expect = e-149
 Identities = 285/292 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacaaaggactttagagacctccccttcttgagagcttagtgatatgctagtccctca 60
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 438 aaaacaaaggactttagagacctccccttcttgagagctaagtgatgtgctagtccctca 379

                                                                       
Query: 61  ctttagcattcactgtgctgtggtaaactcctctcctaaggactatctcatgacagagaa 120
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctttagcattcactgtggtgtggcaaactcctctcctaaggactatctcatgacagagaa 319

                                                                       
Query: 121 ctttccagtctcatgcaacacatggactacgaacattgaattatcagtttttacatagag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 ctttccagtctcatgcaacacatggacaacgaacattgaattatcagtttttacatagag 259

                                                                       
Query: 181 catccacgcaaccatgttgtttatctatttgacctctcaaacgcagagcagcttcctgcc 240
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 catccaggcaaccatgttgtttatctatttgacctctcaaacgcagagcagcttcctgtc 199

                                                               
Query: 241 tcatttagtcaccaagcactccttggccacatactaggtgccaggcattgtt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatttagtcaccaagcactccttggccacatactaggtgccaggcattgtt 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)