BAC Information

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BAC

Clone NameMSMg01-097A03
Chromosome17 (Build37)
Map Location 85,489,418 - 85,489,930
singlet/doubletsinglet
Overlap genePrepl, LOC100043901
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1
Downstream gene1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A03.T7 (MSMg01no097_a03.b1)MSMg01-097A03.TJ (MSMg01no097_a03.g1)
ACCAG313549AG313550
length760712
length of high quality
(start - end)
491 (125 - 615)513 (74 - 586)
definitionCHROMAT_FILE: MSMg01no097_a03.b1 PHD_FILE: MSMg01no097_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:35 2005CHROMAT_FILE: MSMg01no097_a03.g1 PHD_FILE: MSMg01no097_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGGGTGAGTTGTTGGCTGGTGGTGTTTTCTGCCCCCCCNNCCTCTNNN
NNTATCATAATTGCGGCGCTAATACGACTCCTAAATCGTGAGGAGGGCGG
AATTCTGCTTTTATCTCAACTAAAATCTCTTAAAGGTCCATCTACCTCTG
GGCTGGACCACACCTGTCACACAGCTTTTAAGAGGGAGTAAGAGAGGAAT
ACAGGGACTACAAAGCCAGACAGGGATACTTAGTGAGACCCTGTCTCAGA
ATAAAACCTCACCATCAACCAATAAGCAAAACAGAGGTTACTCTATGCGT
CATTATGGCGCTAAGAATAAGCGTCTGACACAGAGCCTTGGGAGATGATT
TAAAACCAAAGGATCGGTTTTGGTAAGATGGCTCAGTGCATTAAGGCTCT
TGCTGCCAAGCTTGGTTTTGGTTCCAGCTGGGATTCACATGGTGGAGGTT
TAATACTGAAATTCTGCAAGCTGTCCTTCACATGAACACATGTGTATGCG
TACACACATACACAGTCACAGTCACACATGTATGGATGCACACATGCTCG
TGCACAGGGGTGACCACATAACCAATCCCATAGCTGCAACATTAAACATA
AAAATAATATGTCTTGGGTTTGGGGGGTTATCTTGCTTTGCTTTCTGAAA
GAGGGTTTGTTTCATCGTGTAGCCCTGGCTGGGCTGGAACTTTAGGTAGA
CAAGGCTGGTTTAAAACGCGCTGAGGTCTACCTGCTTCTCCTTTCTGAGT
GCTAAAACTA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGCATTTCCGGTATTAGCGTCTCCTTG
GCAACCAAAGCAGCGGCGTCGCTTCATTGCACCACTTTTTCTGGTGGCCA
TCTTAAGTGAGGGCGAGCCGGAGTGGGAGGGGACTGTGGAATAGCTGCAG
ACAGGGCTTTCCTCGCTGTTTTCTTTTTTTCCTCACTTTGTCTCTTGCTC
GCCGGAATACCAGAAAACCGAAATACAGTTGTCTCCTAAGATGAGTGAGT
CCAGGAAGAGAAAAAGCCCACCACTGGCCATAATAAAGATGGCGAAATGC
GCTTCCCTATCGGTCTGGGTTGGCGTTACGTAGACCGGCGTGCTGCAAAC
TAGCTCTGGGCGGCGCGAGGTAGGTTGTCTTTCTTGCTGGGTGCTGGAGG
CTGGCTTCGGCTGGACAAGGCTGAGGTGACTGCAGCTCCTTCTGGAGAGC
TTCGGTTTCTCGTATTTGTCTTCTCTACCTTCGCTCGTCCAGCTGTCTTT
CGATTTGCGTACGTATGGAAGGGTTGCTGATGGTTCCCCTTTCCTAATTC
CTCTGCCCACCTTCCAGCCATTCCTCACTTCCCTGGTCCCTTTTTTGATC
CCTGTCTCTTCTGTACGTTCTGACCCGTACCATTCCCCTCAGTCCTGTGA
ACACGACGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a03.g1 MSMg01no097_a03.g1 CHROMAT_FILE:
MSMg01no097_a03.g1 PHD_FILE: MSMg01no097_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:35 2005
         (513 letters)



>mm_chr17_85489218_85490130
          Length = 913

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcatttccggtattagcgtctccttggcaaccaaagcagcggcgtcgcttcattgcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cgcatttccggtattagcgtctccttggcaaccaaagcagcggcgtcgcttcattgcacc 654

                                                                       
Query: 61  actttttctggtggccatcttaagtgagggcgagccggagtgggaggggactgtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 actttttctggtggccatcttaagtgagggcgagccggagtgggaggggactgtggaata 594

                                                                       
Query: 121 gctgcagacagggctttcctcgctgttttctttttttcctcactttgtctcttgctcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gctgcagacagggctttcctcgctgttttctttttttcctcactttgtctcttgctcgcc 534

                                                                       
Query: 181 ggaataccagaaaaccgaaatacagttgtctcctaagatgagtgagtccaggaagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 533 ggaataccagaaaaccgaaatacagttgtctcctaagatgagtgagttcaggaagagaaa 474

                                                                       
Query: 241 aagcccaccactggccataataaagatggcgaaatgcgcttccctatcggtctgggttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aagcccaccactggccataataaagatggcgaaatgcgcttccctatcggtctgggttgg 414

                                                                       
Query: 301 cgttacgtagaccggcgtgctgcaaactagctctgggcggcgcgaggtaggttgtctttc 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgttacgtagaccggcgtgctgcaaactagctctgggcggcgcgaggtaggttgtctttc 354

                                                                       
Query: 361 ttgctgggtgctggaggctggcttcggctggacaaggctgaggtgactgcagctccttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgctgggtgctggaggctggcttcggctggacaaggctgaggtgactgcagctccttct 294

                                                                       
Query: 421 ggagagcttcggtttctcgtatttgtcttctctaccttcgctcgtccagctgtctttcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggagagcttcggtttctcgtatttgtcttctctaccttcgctcgtccagctgtctttcga 234

                                            
Query: 481 tttgcgtacgtatggaagggttgctgatggttc 513
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tttgcgtacgtatggaagggttgctgatggttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)