BAC Information

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BAC

Clone NameMSMg01-097E03
Chromosome17 (Build37)
Map Location 29,611,368 - 29,611,469
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2
Downstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097E03.T7 (MSMg01no097_e03.b1)MSMg01-097E03.TJ (MSMg01no097_e03.g1)
ACCAG313734AG313735
length708696
length of high quality
(start - end)
---102 (142 - 243)
definitionCHROMAT_FILE: MSMg01no097_e03.b1 PHD_FILE: MSMg01no097_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:56 2005CHROMAT_FILE: MSMg01no097_e03.g1 PHD_FILE: MSMg01no097_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCCTANATCGAAGCAGGGGCGGAATTCTGTAAGAA
TGCAACAATCGATGAGATGTCAGTTTACTGCTAGTAGAGAGGGCGGAACT
AATTATGCCTCGCAAAGAACGGAGCCGGAATAGCTCTGGGCTGGTCTGCA
GAGTGTGTACTTGGGACAGTAGTCTGTCTTACCCAGACAAGGGAATTCAG
AATGGCCTAGTCAATAGGTGGGTTTATCATGAAAGAGTTAGGGAATCCCC
CTGAGAGAGATTTCTTCACTAGGCCCACAGGAACAGCTAAATCAAGCATT
TACTATTTTTCTTTGGTGCTGCGCTTAACGATAGACCTGGCTCCCTTCTT
ATAGGTAACACCGGACCTGGTCACCATCATCTTTTGATGTATACATTCCT
TTTGTATCGTGTCACTGTAACTTGATGTATGTCTCACCTGGTTTCTTGTC
ACTCTTCTGTATGAAAAGTTTGATGCTCCACTTGAAAGATTACACTCGCC
GGCCGTGATGGCGCTTCTTGAATCCCAGCCCTTGGAAGGCACACGCAGGC
GCATTTCTGAGTTTGAGGACAGCCTGGTCTACAGAGTGAGATCCAGGACG
GCCTGGGCTACACTGAGAAACCCTGTTCTCGTGGAACCAAGCCTTAACCC
CCGTGGCACGCGGTAGACCCGACGATTTGCACCTCCAGATCATCATTAGG
GGCTCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTGGGAAATAAGCAGTCGTCTCCTTCCATCTCCTGGACTGGTCT
TGCGATCAGTCAGAAGGTAACTTAAGAGTCCTCGTCACGGTCCTTCCCCT
GAGAGGCCATCACCCCAGATTTCTCACATTGAAGAATCAAGTCCCTAATT
AAAAGGAACTGTTTCCTGTACACTTCATCCTGGCTGGTGAATTTGGATGC
AAGAAGCATCGCTGAGAGCTAGTGTGACTCTCTGGACAAACTTGGAACAC
AATTGGCCTCCCACATCACCTTGCAACCAAAGGGAAGAGATACATTTAGG
GTAAGTGTCAAGGTCCTGGACGGTAGAAGATATTTTTATGCAGGGCGATT
TCCTCAAACCCACCAATGACACCATGCAGACAGCTGCCCATCCCACATGA
CCTGTCAACTTCCCAGGCATGCAGTTAGCTATACTCTAGGGCGACACAGG
AAATATGGCTGCCCTTTCCCCCAGTAAGGCTCAGAAGCAGAAATTACACC
ATATGTGTTACTTCAAGGCATCCACTCTAAAGGCCTGTGAGCCATGTGTC
TATAAGAGACCCCTCTCCCTAAATTACCAACACAATATGTTCAGTTGGAA
ACCAGAACCTTTGTTTAATCCCCAAAAATTGCTGGAAAGTGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_e03.g1 MSMg01no097_e03.g1 CHROMAT_FILE:
MSMg01no097_e03.g1 PHD_FILE: MSMg01no097_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:56 2005
         (102 letters)



>mm_chr17_29611168_29611669
          Length = 502

 Score =  182 bits (94), Expect = 6e-51
 Identities = 100/102 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttcccctgagaggccatcaccccagatttctcacattgaagaatcaagtccctaatta 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccttcccctgagtggccatcaccccagatttctcacattgaagaatcaagtccctaatta 243

                                                     
Query: 61  aaaggaactgtttcctgtacacttcatcctggctggtgaatt 102
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 242 aaaggaactgtctcctgtacacttcatcctggctggtgaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)