Query= MSMg01no097_j21.b1 MSMg01no097_j21.b1 CHROMAT_FILE:
MSMg01no097_j21.b1 PHD_FILE: MSMg01no097_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:25 2005
(560 letters)
>mm_chr17_45540795_45541750
Length = 956
Score = 949 bits (491), Expect = 0.0
Identities = 542/561 (96%), Gaps = 6/561 (1%)
Strand = Plus / Plus
Query: 1 aaaccactgctgttaataggcttcaatgcatcacagacatatgaaatcacagagccactg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaaccactgctgttaataggcttcaatgcatcacagacataggaaatcacagagccactg 260
Query: 61 tctgcatagcagctccactctaactcaaactgcaggatacacaaaaatgtactgagtttc 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcatagcaactccactctaactc-aactgcaggatacacaaaaatgtactgagtttc 319
Query: 121 tgtaaatgtcggtgctctgtgagctatagatcaaaactcccactgctgtgctctcactga 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 tgtaaatgtcggtgctctgtgagctatagatcaaaactcccactgctgtgatctcactga 379
Query: 181 cgcgaccagcgtgactttagtaac-ccttctccctcccgcacgtaaacaaaggttctgat 239
| ||| | ||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct: 380 c----ccatcttgactttagtaactccttctccctccctcacgtaaataaaggttctgat 435
Query: 240 tgagttaagagtacccagcaaagtgttcaagaactacaaagcaatcatttgtccagccct 299
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 436 tgagggaagagtacccagcaaagtgttcaagaactacaaagcaatcagctgtccagccct 495
Query: 300 agtacttaagtcatcagacgtattaactggctcacaatttcaactgaattggaattttaa 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtacttaagtcaccagacgtattaactggctcacaatttcaactgaattggaattttaa 555
Query: 360 aaggataccaagggcaatgaatatagcaggtaaaagtgaatgcagcgcaagcctagcagc 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaggataccaagggcaatgaagatagcaggtaaaagtgaatgcagcgcaagcctagcagc 615
Query: 420 aggaattcaaggcaaaccccacttagaaggaaatgaaagaactgcctccacaaagctttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aggaattcaaggcaaaccccacttagaaggaaatgaaagaactgcctccacaaagctttc 675
Query: 480 ctcgagcacttacatacacatcatacacacaataataatcgatttttaaacatataagca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctcgagcacttacatacacatcatacacacaataataatcgatttttaaacatataagca 735
Query: 540 aatggataccaacctcaagtc 560
|||||||||||||||||||||
Sbjct: 736 aatggataccaacctcaagtc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 956
Length adjustment: 10
Effective length of query: 550
Effective length of database: 946
Effective search space: 520300
Effective search space used: 520300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no097_j21.g1 MSMg01no097_j21.g1 CHROMAT_FILE:
MSMg01no097_j21.g1 PHD_FILE: MSMg01no097_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:25 2005
(245 letters)
>mm_chr17_45671976_45672620
Length = 645
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1 aggcctgcctaaggtatgagaccctgcctcaactaagtttcaaaacaaaacaaaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggcctgcctaaggtatgagaccctgcctcaactaagtttcaaaacaaaacaaaacaaaa 444
Query: 61 acccaaccaactatctaaacaatcccttcctctactcatgaatgcaaaggaaatgagaga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acccaactaactatctaaacaatcccttcctctactcatgaatgcaaaggaaatgagaga 384
Query: 121 agatgatagaaggagaggaagaggcagggagaagcaatcccaaagacaatgagaaaggag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agatggtagaaggagaggaagaggcagggagaagcaatcccaaagacaatgagaaaggag 324
Query: 181 gcaagtgagttggggggcggtgggggtgggggtagtaccttgagggtgtggcaagctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaagtgagttggggggcggtgggggtgggggtagtaccttgagggtgtggcaagctttg 264
Query: 241 atg 243
|||
Sbjct: 263 atg 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
