BAC Information

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BAC

Clone NameMSMg01-097N13
Chromosome17 (Build37)
Map Location 90,149,034 - 90,149,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097N13.T7 (MSMg01no097_n13.b1)MSMg01-097N13.TJ (MSMg01no097_n13.g1)
ACCAG314175AG314176
length764857
length of high quality
(start - end)
117 (128 - 244)---
definitionCHROMAT_FILE: MSMg01no097_n13.b1 PHD_FILE: MSMg01no097_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:44 2005CHROMAT_FILE: MSMg01no097_n13.g1 PHD_FILE: MSMg01no097_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATATGGATTTATTGATTATTATTATTTTTTTCAACCCCCTAACAACA
CCNGCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGAACC
GCGGAATTCTCTATTTTTTCATTATATTACTTTTGGATATTACATTCAGT
TTCAAAGTGAATGTATCATTTTATATATTTTGTATTTATAGAAACTCTTT
CAATGTGGCCATGTACATTACTCCTTGCCATCTGTCTCATGGAGAAGATT
TGACGTTCATAAATGTGAATTCCAATTTCAATCAACTATTAAATATAACT
AGTCATTGTCATGACAGCTACTATTGTCTGTTTTCAGACCGTAAACATTT
CTTATGGATGATTTTTCCCCCATATTTTCTAAAGTTTCACCTGACCCACA
TCAATTATTCTTTATATTGTCCATATACTTCTACGAATTCGTGCAATAAA
GGTTTAGATCCTTTGCGTTTCTCATGCCCATTTTTGATCCCGCATTGAAC
CTGTTGTATAATACATGACTCAGCGCTTCACTTTTAACAAAATTATTTGC
GCAAAGTCCGCCATACCATGTTTTATTCACCCTCAACAAATACTTGCTCG
CCCCCCCCCCCCCTTCCATTTAACACTACAACAAGCTTCTCACTTCCCGT
TGTTCTACTCTAGCAGGCCCTTTTTCTTCATCTGTACCACAAGTAATCTT
ATTTACCGTTCCTTTGTTTTTTTCTCTCCCCCACGTTTCATTTTACCCCC
ATCTTATTTTCCCG
CACAACACAACACAAAGAAAACGGGCGGGCGGCCGACCCTTTCTGCGGTG
CTTACGCTCTTCAATGATAGTGAGTAGGCCAGGNGGNNGNCTGGGTTCTG
GAGCCGAGGNGANANNANANAAGGTTTCCAAACACAGGGGGGNNNAGGGN
NGNANGNAANNNNNNGAGAGGAAAANAAGANNGACAGCGAGGAAAACGAC
CACGAGGGCCGAACAAAGAGAGACGGGAGAGGCGACCCCGACCCGGGACA
AGACCGGGAAAGAACCAGGCCGGAGCGAGGCGGGGGCGGGCGGGGCGGAA
CGACGGGGGCAAGGGCCCTATTTAACCCAGGGGGGGGCACGACGGGCCCG
GCGGAGAGACGGGCGGGGCAGGGGCAAAGACAGCGTTTTTTTTTTTAGAA
ACAAGGGCCCCGGAAAGCGAGGGGGAGGATGTTTTTCCCTGCCTCCGATC
ATTATCAGGTTAGGGTATAGCGAGTTGAAGGGAGCACGGGGGGGGCGTGT
GGGGAGGGGAGTTGGGTCCGCGGTTGGCGCGCGTTGATATGGGCGGGATG
CCGAGACCATAGACATGGCGGGGGGGATGCGGGGGCCATTTCAATTATTT
AACGCGGGCGATTCAGGTGTGTCGGGAGGGAAGGGTGTAGGAACCCGTGG
GGGGGGCCGCGGGGAACGTGTGGTAGGTGGGTGGGGTGTTTTTGCTTAGA
AGAGGTCTTGCGTGGGCTGTGCCGTGGGTGTGGGTGGGCGCGCTGGGGTG
TTCCCTGTGGCTGGCGNGAGAAACCGATAGATGCGCGGGCGGGGGAATAC
GGTGGTTGCGGTGGTACGTGTGGGTGGCAACCGGGGGTGTCGCCCGCGTG
TGCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_n13.b1 MSMg01no097_n13.b1 CHROMAT_FILE:
MSMg01no097_n13.b1 PHD_FILE: MSMg01no097_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:44 2005
         (117 letters)



>mm_chr17_90148834_90149350
          Length = 517

 Score =  211 bits (109), Expect = 1e-59
 Identities = 115/117 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttttggatattacattcagtttcaaagtgaatgtatcattttatatattttgtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttttggatattacattcagtttcaaagtgaatgtatcattttatatattttgtattt 260

                                                                    
Query: 61  atagaaactctttcaatgtggccatgtacattactccttgccatctgtctcatggag 117
           |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 261 atagaaactctttcaatgtggccatgcacattaccccttgccatctgtctcatggag 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)