Query= MSMg01no097_n18.b1 MSMg01no097_n18.b1 CHROMAT_FILE:
MSMg01no097_n18.b1 PHD_FILE: MSMg01no097_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:45 2005
(245 letters)
>mm_chr17_59343644_59344288
Length = 645
Score = 422 bits (218), Expect = e-122
Identities = 235/242 (97%), Gaps = 3/242 (1%)
Strand = Plus / Plus
Query: 1 ttaagatttccactggccctaagaaataacacacacacacacacacacacacacacacac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ttaagatttccactggccctaagaaata---cacacacacacacacacacacacacacac 260
Query: 61 acacacacacacacgtgcacgcgcacacacactcatacacatacacacatgtatatattc 120
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 261 acacacacacacacgtgcatgcgcacacacactcaaacacatacacacatgtatattttc 320
Query: 121 ctcttcatgcagatgtaaactgatttctaaagttctattaatcatgatagtctgaaaagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ctcttcatgcagatgtaaactgatttctaaagttctattaatcacgatagtctgaaaagg 380
Query: 181 agctatattatccacaggtttgtctttggattatgatgagctatagcaccagtaatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctatattatccacaggtttgtctttggattatgatgagctatagcaccagtaatttgt 440
Query: 241 tg 242
||
Sbjct: 441 tg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_n18.g1 MSMg01no097_n18.g1 CHROMAT_FILE:
MSMg01no097_n18.g1 PHD_FILE: MSMg01no097_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:45 2005
(338 letters)
>mm_chr17_59495365_59496102
Length = 738
Score = 630 bits (326), Expect = 0.0
Identities = 335/338 (99%)
Strand = Plus / Minus
Query: 1 acagactacggaaaggttattttcaaaagaaagttttcttacaggacccaggaacttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acagactacggaaaggttattttcaaaagaaagttttcttacaggacccaggaacttcag 479
Query: 61 ggaagtcttgcagtcctcctgaacatcagagaagggacctcaggagaaggagagggtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaagtcttgcagtcctcctgaacatcagagaagggacctcaggagaaggagagggtcat 419
Query: 121 agactggcaccttagggttactgagctttatgggtttgagaaatggggttgataagctgc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agactggcaccttagggttaatgagctttatgggtttgagaaatggggttgataagctgc 359
Query: 181 ttcacctgttggacatttcaaggtatccagtgtcttttcagttttgatcaaatgctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcacctgttggacatttcaaggtatccagtgtcttttcagttttgatcaaatgctcaag 299
Query: 241 cagtctcatgtcagaggcgctcatttgggtgaagagataagaagccaaaagttactctgt 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cagtctcagggcagaggcgctcatttgggtgaagagataagaagccaaaagttactctgt 239
Query: 301 aatctgcctttagcaaaggcaaaatagagtaggagtag 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatctgcctttagcaaaggcaaaatagagtaggagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
