BAC Information

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BAC

Clone NameMSMg01-098K04
Chromosome17 (Build37)
Map Location 26,582,679 - 26,582,913
singlet/doubletsinglet
Overlap geneC230078M08Rik
Upstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098K04.T7 (MSMg01no098_k04.b1)MSMg01-098K04.TJ (MSMg01no098_k04.g1)
ACCAG314765AG314766
length773747
length of high quality
(start - end)
240 (129 - 368)257 (132 - 388)
definitionCHROMAT_FILE: MSMg01no098_k04.b1 PHD_FILE: MSMg01no098_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:48 2005CHROMAT_FILE: MSMg01no098_k04.g1 PHD_FILE: MSMg01no098_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCCCCCCCCCTCCCCCCCTCCCCCTCCCTCCCCCCTCCCCC
CTACCTTTCCTGTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAATGGCATTGTGCAGCCTTGGAAC
ATGGGAAGCAGTAACTGCTCACTGCTCTGTCCATCCTGCCCTGGCTGGGG
ACATGGCTCGGGAACACTGGGCCTCCCAGCGTTCCTTAATATTTTAGTGT
CTCACTGTTTCACCCAAGTCCCTAACAGAACTATCCATATGACAATCTGT
CTGTGCCTTATGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGAGCACTTTTTATCCTTTAAAATGTATTCCTACAACGTGAACAATAA
GCTACCACATAGCGGTTGCTCTCCAGACGCTATCCAGGAGCCTCTGATAC
CCTCGTGCAGTATGTAGGCGTAATCCACCTGTTCTATCCCCACTTATCCC
CTCAATTTGTGTACAGATTCTTTGAAAACCCCTCCTTTTTTTTACGATTC
AAAACCGTGAACTCTTCTACCTCCGTTCCGTTTCTATTTTACCTTTTATT
ATTCTCCCCCCCATTTTTTCCGTTCCCCCCCCTATTTCCCAACTCTCACT
ACTTTTCCTATAAAAATTTTATTCATCCCATCCCCTTTCTTTACCCCAAT
ATTACTTACATGAATTACCACCTCACTCTTTTCATCCATATACTATATCC
CCTTTTTTTTTTTTTTTTCCCCC
NNNNNNNNNNNNNNCCCCCCCCCCNCCCCCCCCCCCCNNNNNCCNTGACC
CCGCCTTCTCCATGCTATGTGTAGCCTGGCGGCCGCCTTCCCAAAAGTTT
AGGTGACCTATATTTTTGCTCCGCGGAATTCAAGAGCAGAGGTGGGAAGG
ACTGGCCGAATTTTAAGCCTAGCCTAGACTACACAGCAAGTTCCAGGCTA
GCCAAGACTCTCACTCAAAGTCAAAACAGAAGAAAAAGTGTGTATATATA
TATATATATACATATATATATATATATACATATACATACATATATTCATA
TATGTATATGCAGATATACATACTTTAAGGCCCTTTTTGTTCTAAATTAA
TAACAGCATGACAGACACCCCCTTTCTGCCATACTTCAAATACTTCAGCA
GCTAACAGTTTGGTCCCAGACAGCGGCCTTGGTCTGTACTGTCCACGGCA
TGGAGATTATACTCAAATATCCTTTCCAGCTGGTGGACGAAGCTGGGGGA
AGCTCAGTTACCCAGCCAGCCCCTGGCTCCTGCTCTCCTGCCTACAGTGG
TAGTTACTGCCTCTTGGGTAATAATCTGCATCACGCAAAGCCTTCTGTTG
TCGGATCTCGTGCCTTTTCGTCTCGTGTCCCTTATGACCCCCTTTTCCGT
GATCCCTTGTTCCCCCTAGCCCCCCCCCATACGCATCAACCGACTGCACG
GCCCACGGAACGCCTTCTGAGGATCATGGCCCGCCGAACTTTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_k04.b1 MSMg01no098_k04.b1 CHROMAT_FILE:
MSMg01no098_k04.b1 PHD_FILE: MSMg01no098_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:48 2005
         (240 letters)



>mm_chr17_26582479_26583117
          Length = 639

 Score =  422 bits (218), Expect = e-122
 Identities = 233/240 (97%), Gaps = 5/240 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcattgtgcagccttggaacatgggaagcagtaactgctcactgctctgtccatcctg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tggcattgtgcagccttggaacatgggaagcggtaactgctcactgctctgtccatcctg 260

                                                                       
Query: 61  ccctggctggggacatggctcgggaacactgggcctcccagcgttccttaatattttagt 120
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ccct-gctggggacatggctcggggacactgggcctcccagcgttccttaatattttagt 319

                                                                       
Query: 121 gtctcactgtttcacccaagtccctaacagaactatccatatgacaatctgtctgtgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctcactgtttcacccaagtccctaacagaactatccatatgacaatctgtctgtgcct 379

                                                                       
Query: 181 tatggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcactttttatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 380 tatggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----cactttttatcc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 639
Length adjustment: 9
Effective length of query: 231
Effective length of database: 630
Effective search space:   145530
Effective search space used:   145530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)