Query= MSMg01no098_k14.b1 MSMg01no098_k14.b1 CHROMAT_FILE:
MSMg01no098_k14.b1 PHD_FILE: MSMg01no098_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:50 2005
(647 letters)
>mm_chr17_48554628_48555674
Length = 1047
Score = 1166 bits (603), Expect = 0.0
Identities = 633/643 (98%)
Strand = Plus / Plus
Query: 5 gaattcttgccattgtgtctgaagcgatagcctctactcctaaagcattagcattgaatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgccattgtgtctgaagcgatagcctctactcctaaagcattagcattgaatc 264
Query: 65 tcagactggacactgggcagctgcacttccgctcgggctactgctgagctcctaaaattg 124
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagactgcagactgggcagctgcacttccgctcgggctactgctgagctcctaaaattg 324
Query: 125 gatttggtgttaggaaagttgtcagtgacctctaccttttatgctgcatgcctgcttgtg 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gatttggtgttaggaaagttgtcagtgacctctaccttttatgcttcatgcctgcttgtg 384
Query: 185 gggagcagtcaggatgtccttgatgtccctttgaggacttaaatgacattggtcttaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagcagtcaggatgtccttgatgtccctttgaggacttaaatgacattggtcttaggt 444
Query: 245 gaccctttgcttcttcttgaggacctggtccataccccttctctttttattgccctagta 304
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gaccctttacttcttcttgaggacctggtccataccctttctctttttattgccctagta 504
Query: 305 gtttttagtcagtactgaccaaagcccaagtgactttcagtgtgaccacaacatctcttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttttagtcagtactgaccaaagcccaagtgactttcagtgtgaccacaacatctcttc 564
Query: 365 tttttattttttaatgtgcattagtgttttgcttgcatgtatgtctgggtgagggtgttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttattttttaatgtgcattagtgttttgcttgcatgtatgtctgggtgagggtgttg 624
Query: 425 gatccctggaactggagttaacaggcattgtgagctgtcatgtggatgctgcaaattaga 484
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 625 gatccctggaactggagttaacaggcgttgtgagctgtcatgtggatgctgtaaattaga 684
Query: 485 acccctggtcctctggaagagcagccagaggcctctctccaagccgtcatcgtttcttca 544
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 acccctggtcctctggaagtgcagccagaggcctctctccaggccgtcatcgtttcttca 744
Query: 545 atatactagtggcttatgtatcagaaagttaaaaattcactgttcaggaacttgattgtc 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 atatactagtggcttatgtatcagaaagttaaaaagtcactgttcaggaacttgattgtc 804
Query: 605 ctgctgtcgtgtgaaattggcaggtttaagctttccctttgtc 647
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgctgtcgtgtgaaattggcaggtttaagctttccctttgtc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_k14.g1 MSMg01no098_k14.g1 CHROMAT_FILE:
MSMg01no098_k14.g1 PHD_FILE: MSMg01no098_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:50 2005
(437 letters)
>mm_chr17_48591008_48591848
Length = 841
Score = 803 bits (415), Expect = 0.0
Identities = 433/441 (98%), Gaps = 4/441 (0%)
Strand = Plus / Minus
Query: 1 tgacaggggacaaacaatggaggtgtctgtctttgttataccaag----ctgagtcacac 56
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 641 tgacaggggacaaacaatggaggtgtctgtctttgttataccaagctgtctgagtcacac 582
Query: 57 agaaaactggactttgccagcagacagggtcactctcccctgacgcccttcgtggtggct 116
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 581 agaaaactggactttgccagaagacagggtcactctcccctgacgccctttgtggtggct 522
Query: 117 gggaggtagatattggcaggaagcaccagaccactcctgcccaggctccctacccacctc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggaggtagatattggcaggaagcaccagaccactcctgcccaggctccctacccacctc 462
Query: 177 cactgcctgccgcctccatctctgaagcacaaagtgcttgggatctgggagggctctgcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cactgcctgccgcctccatctctgaagcacaaagtgcttgggatctgggagggctctgcc 402
Query: 237 agcctccattccccagccaggcagaggcaggccaaccaggaggctggaatcagggactgt 296
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 401 agcctccagtccccagccaggcagaggcaggccaaccaggaggctggaatcggggactgt 342
Query: 297 tctcagggatcatgaactcatctcgaaagctggcgcttgcctcacgtgaagacaatctgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tctcagggatcatgaactcatctcgaaagctggcgcttgcctcacgtgaagacaatctgg 282
Query: 357 ttccagaaaggctctaaggagatccgagggcccctcccatccccagggacacagaactgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttccagaaaggctctaaggagatccgagggcccctcccatccccagggacacagaactgg 222
Query: 417 gtcacaggcacagagagcatg 437
|||||||||||||||||||||
Sbjct: 221 gtcacaggcacagagagcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 841
Length adjustment: 9
Effective length of query: 428
Effective length of database: 832
Effective search space: 356096
Effective search space used: 356096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
