BAC Information

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BAC

Clone NameMSMg01-099K15
Chromosome17 (Build37)
Map Location 30,429,996 - 30,430,286
singlet/doubletsinglet
Overlap geneBtbd9
Upstream geneBC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K15.T7 (MSMg01no099_k15.b1)MSMg01-099K15.TJ (MSMg01no099_k15.g1)
ACCAG315548AG315549
length740708
length of high quality
(start - end)
88 (201 - 288)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no099_k15.b1 PHD_FILE: MSMg01no099_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:15 2005CHROMAT_FILE: MSMg01no099_k15.g1 PHD_FILE: MSMg01no099_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTGTTACCTGAAATGTTTTGCACAATCTGTGGTGGGATCCGG
AACCAGCAGGTGGCTCTGTTTTGCAGGGTAGGCAGGGAAGGCCTCTCTAA
TGAAGTCAGCTGATCCAAGATGTGAGTTGTTATCTCACTGCTGGCTCAGT
TGTGAACCATACTCAAAGAGCATTCCAGCCATTTGGACAGCAGGCAAGGA
CTGGGCAGTGCGTATTTTTGGTAAAGAGGGCTCTGTGTGATGCGCACCCT
GTAGTCTGGGGAAATGTCTGGCTTTTAAAGAGGGTATCACATAATCAGGA
ACTCACGTTTTTTAGGCCCTGTATGTACCCCATTCCTTCTGAAGATGTAT
TATATGATGGTATGAACAAGCTAAGATCTTATGTTGAGATCTTACCGCTT
GGTTCTCTTGAGAGGTCAATGCTTCACACCAAATGGTGATCTGATATGAG
TATGGCTTAGAGCAAAGCCCGGCCTGTTTTATTCTACACCTGTTTCTGCC
CGCTTTTTTTCCCTTGTGTCGGTCCCTTTCGCCCCAGCCACTTTTACCCC
CCCTTTTCACCCATTATTTTTTTTTCCCGCGCTTTCGCCTTCTTGTTTTT
TCGCCCCCCTTTTTTTTACTCTTTTTCATTATTTCTTTTTTGTCCCCTCA
TGCTCTTTTATTCCTTTCTTCGCGCTCGTTTTCTCTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGTTCAGGGCTGAGACAGACG
ACTCGGCATGACTGATAGGAAGCAAATTTTGTAAAATATCTTTCCAATTT
CAACTAGAATTATAGGCAATCTTAATCTGAAGCAGAGGAGTCATATATTT
AGATGCTTGCTGTATTCTTCAGACTATAAAAAGGAAATTTCTAGCTCTCG
AGGTTGCAAAGAAGGCTGTCTTAATGTAAATGGATGTGCTGCTGCCCCAG
CGGAGCTCAGACAGGATGAAATGTATCCAGGATGAGGCTTCAGGCGGCCT
TCCCGGTGCCGATGCCAGTGTCGGTGCCTGCCTCCTGAGCTCAGTCATCT
GCAGGACCCGGTCTTTATCAGTTTCCTCACATACACTTATATCAGCCACA
CTGAACAAATATGATGTCCAATTTAGGTGACAGATAGAACTCCCTTTAGT
TGCAGTATCACAAGAGCGTTGTCAGTGCCGTCTATGATAGTTACCAAGCA
CCAGGCACTAGGAATCTTCTAGAGACCAACCCTATCACGATATTGAAAAA
AACGCGCATCATATAATTCTCTATCCCCCGTTTGAGACTTTCTGTGGCCC
TCTATGAAATTTTGTCGCCCATTCCCAGACAAAATATTTCACACATTCAC
AACGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k15.g1 MSMg01no099_k15.g1 CHROMAT_FILE:
MSMg01no099_k15.g1 PHD_FILE: MSMg01no099_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:15 2005
         (291 letters)



>mm_chr17_30429796_30430486
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagttcagggctgagacagacgactcggcatgactgataggaagcaaattttgtaaaa 60
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cttagttcggggctgagacagacgactcagcatgactgataggaagcaaattttgtaaaa 260

                                                                       
Query: 61  tatctttccaatttcaactagaattataggcaatcttaatctgaagcagaggagtcatat 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tatctttccaatttcaactagaattataggcaatcttaatttgaagcagaggagtcatat 320

                                                                       
Query: 121 atttagatgcttgctgtattcttcagactataaaaaggaaatttctagctctcgaggttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atttagatgcttgctgtattcttcagactataaaaaggaaatttctagttctcgaggttg 380

                                                                       
Query: 181 caaagaaggctgtcttaatgtaaatggatgtgctgctgccccagcggagctcagacagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagaaggctgtcttaatgtaaatggatgtgctgctgccccagcggagctcagacagga 440

                                                              
Query: 241 tgaaatgtatccaggatgaggcttcaggcggccttcccggtgccgatgcca 291
           ||||||| |  |||||||||||| ||||||||||||| |||||||||||||
Sbjct: 441 tgaaatggaagcaggatgaggctgcaggcggccttcctggtgccgatgcca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)