BAC Information

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BAC

Clone NameMSMg01-099M09
Chromosome17 (Build37)
Map Location 84,628,873 - 84,628,986
singlet/doubletsinglet
Overlap geneThada
Upstream geneEG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M09.T7 (MSMg01no099_m09.b1)MSMg01-099M09.TJ (MSMg01no099_m09.g1)
ACCAG315632AG315633
length790805
length of high quality
(start - end)
302 (48 - 349)115 (146 - 260)
definitionCHROMAT_FILE: MSMg01no099_m09.b1 PHD_FILE: MSMg01no099_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:24 2005CHROMAT_FILE: MSMg01no099_m09.g1 PHD_FILE: MSMg01no099_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACACCGTGTGCCTCTACTTACCAGAAAAAAAGTCAAACTGCTG
CTGTAGCCAATGTTGTGGGCAAGTCTCAGCAACTTTATGTCAAATGAGAA
AATCTAGATTAAAAAAAATTATAAAATGTACCACTATATTTTTGTGAAAG
TTTAAAATAGATGAAACTAATCTGTGACAATAGAAATCAAGTCAGTGGTT
GCTTGGGGAGGCAAGAGCTGGCCACAGAAGGAGCTTCATGGGAAATCATG
AGTCTGGATAGTAAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCGCGAGCTATCGATGCCCTATGCCCGTCATTCCCATCATATCTAAT
AACTAACACCACGGTACGCGCGCCCCCCCCCTTCATCTACCTTTCACTGC
ATTTTCCATCTCACTCTCACACGCTTTTTTCAAATCTTCACTCAAATCCT
ATTTTTTCACCACACCACCCATTTCTTATTTCTATCAATCTTTCCCTAAA
CTATCTATTAACTCTTTCTCTCATTTTCACTCTCGGCTACCTCATAGTTT
GTTTCTCAATCCCTTTTCAAACATTTCCATTCTTTTTTTTCTTTTTTTCT
TCTCACCTGCCTAATTCTCGCCTTTTCCCTTCCTTCGCTTACATTCTTTT
ATCCTCCTTCATCCTAGCCTCATCTCATCCATACCCTATATTATATTTTC
TATTCCTCCCCCCTCTCACTTTATTAATTTCTCTATTTTT
TTTTTCCCCCCTTTTTTCTTCCCTTTTCCCTTTCCCCTTTTCCCCCNCTC
CCCCCCATATTNNCNNCNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCC
CTGCATGCACAACTGCTTGTACTTTTTGATTACTAGTGTGAAAACCTGCC
ACTTTTCTTAGTAGAGTTTAGAACCCAGCTCCTAGGCTGAGGCTTATAAT
GAAGCTCAGCATCTGAGCTCTCAGGTAGCGTAGTGAGCAGGCACCCTGCC
TGATGACTGAAGAGTTGTAGCCTGCCAAGACTGTGCAAAAGCCCTAGGGC
ACACCTGTCATTGGAAGCAATATCCAAACTCCACATGAGGAACTCCTTTG
GGGAGAGGTGAGCATAGCACTCTGTCTGGGGAAGCCATTCGCTGGGGTTC
AAGTGATAGAGAATCTTTAGGACCTACAAGCCAAATCAAAGAAAATACGA
TAAGGAAACTCATAGGGAAAAGTCTTGTGCTCCTAAATCAAGATCACTTT
TAACAACTAGGAAGGTTGAATCTATTTTCAGAAGGCCCCCAAATCTCAAT
GACTTCTTCTTTCCTTTCCACCATCTTATAGAAACTGACCCAGGTTAGAA
CAATTGATAAGTTTGAGGGCCCCTTGCTGACTTTAACATCTCAGCCTAGA
AAGCTCTGTATGTTCCCTCACACTATGCCCAATATCTATGTCACAATTTT
TCCTTTCCTCCCTCTTTTTCCCTATACTTACTCAACTGTTTTGAACGAAC
GTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m09.g1 MSMg01no099_m09.g1 CHROMAT_FILE:
MSMg01no099_m09.g1 PHD_FILE: MSMg01no099_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:24 2005
         (115 letters)



>mm_chr17_84628673_84629187
          Length = 515

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccctgcatgcacaactgcttgtactttttgattactagtgtgaaaacctgccacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccctgcatgcacaactgcttgtactttttgattactagtgtgaaaacctgccacttt 260

                                                                 
Query: 61  tcttagtagagtttagaacccagctcctaggctgaggcttataatgaagctcag 114
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcttagtagagtttagaacccagctcctaggctgaggcttagaatgaagctcag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)