BAC Information

Click to search

BAC

Clone NameMSMg01-099M22
Chromosome17 (Build37)
Map Location 37,812,591 - 37,972,615
singlet/doubletdoublet
Overlap geneOlfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125
Upstream geneLOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118
Downstream geneLOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M22.T7 (MSMg01no099_m22.b1)MSMg01-099M22.TJ (MSMg01no099_m22.g1)
ACCAG315658AG315659
length701714
length of high quality
(start - end)
610 (43 - 652)439 (76 - 514)
definitionCHROMAT_FILE: MSMg01no099_m22.b1 PHD_FILE: MSMg01no099_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:27 2005CHROMAT_FILE: MSMg01no099_m22.g1 PHD_FILE: MSMg01no099_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:27 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(37,812,591 - 37,813,196)(37,972,177 - 37,972,615)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCCATTCCCATTCCCCTGAATTCATATTAGTCTTACCAGGAGATAA
CACTCCCCCTCTCCCTTTTTTACCCCACCTCCAAATCCTTCTGAGTGACC
TCATCAGGTAGATCTTTCATTGGGGCATAGGGAAGGTGTAGCATGGTACA
ATTGGCTGAGGATTTAGAGAATTTAGATCGTCTCAAACAATGTATATATT
CAAGAATATTGCACAATAAATCCAGATATGCACGTACTATTGGTCCCTGG
AGCTGGTTTCTTGGGATTCATCATGCAATTCTGTCACCTCTCAACCCTAT
CCTTTTCCCTGAAAATCAAAACATCTACTTCCATTCCTCCAAGTTCAATA
CCCCATCCCCTTTTTTGTATCAGAACACATCCTGCAGTTACTGACACCAA
ACTCAAACAGATCATGTAGACCTCCAATCTTCCTTTTCCCAGCTCATTCC
ACCCAGCTTCCAACATCATCAGTAATTCTCTGGGATTCTGCAGGTTACTC
TTGCCTGGAAAGAAGATAAACTAATTGAGAATCTTCAAGGCTCTCTCATT
TCCACTCTCCTTTTCACCAAATCCAATTCTCCAGTCTCACTCCCATTTCT
GTAGCAGATCACCTCCATTCTGANCCCATCTCCAGCACACCATGTACATG
A
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATCACAGTTGAGAAGATCTGAGT
ATAGGAGAAGACTATGGCTATTAAACAGACAAAGGCTGTGAATGTTGTAA
ATGCAGCCACTGCAATCTCATTAATGAATTCATAAGAACAAGCTAGTTTT
AGCATTTGGGGAATGTCACAGAAGAACTGGTGAATAATTCTCTTCCCACA
AAGAGGAATTGAGAAATTAACGCCTGTGTGTAGGAGCCCAGATAGTCCTC
CAGCCATCCATACAGCTATCACTGCTCACTTGCAGGCATGGGGATCCATA
ATTGTCTCATACTGCAGTGGCCGACAGATGGCAACATACCGGTCATAAGA
CATCACTGTGAGAATAGCTACTTCTGATGAGGCCAGAGCTATGAAGAAGA
AAACCTGAAGCATACACTGACCAAGAGAAATGAAACCATTGTCCATGAGT
GAGCTTGCAATAGACTGAGGAACAGTAACAGAGATGAAGCAGAGATCCAA
AAAAGAGAGGTGCTTCAAGAAGTAGTACATGGGAGAATGCAGACGTTGTT
CCAAGGCGATGATGGTGATAATGAGCAGATTGCCCCTGATGGTCAACATG
TATGTGATCAAAAAGAGGACTGCCCGTAAAATCTGACCGTTACGCTCATT
AAGAACCCCATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m22.b1 MSMg01no099_m22.b1 CHROMAT_FILE:
MSMg01no099_m22.b1 PHD_FILE: MSMg01no099_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:27 2005
         (610 letters)



>mm_chr17_37812387_37813396
          Length = 1010

 Score = 1156 bits (598), Expect = 0.0
 Identities = 604/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctccattcccattcccctgaattcatattagtcttaccaggagataacactcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctccattcctattcccctgaattcatattagtcttaccaggagataacactcc 264

                                                                       
Query: 65  ccctctcccttttttaccccacctccaaatccttctgagtgacctcatcaggtagatctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccctctcccttttttaccccacctccaaatccttctgagtgacctcatcaggtagatctt 324

                                                                       
Query: 125 tcattggggcatagggaaggtgtagcatggtacaattggctgaggatttagagaatttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 tcattggggcatagggaaggtgtagcatggtacaattggctgaggatttagagaatttat 384

                                                                       
Query: 185 atcgtctcaaacaatgtatatattcaagaatattgcacaataaatccagatatgcacgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcgtctcaaacaatgtatatattcaagaatattgcacaataaatccagatatgcacgta 444

                                                                       
Query: 245 ctattggtccctggagctggtttcttgggattcatcatgcaattctgtcacctctcaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctattggtccctggagctggtttcttgggattcatcatgcaattctgtcacctctcaacc 504

                                                                       
Query: 305 ctatccttttccctgaaaatcaaaacatctacttccattcctccaagttcaataccccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctatccttttccctgaaaatcaaaacatctacttccattcctccaagttcaataccccat 564

                                                                       
Query: 365 ccccttttttgtatcagaacacatcctgcagttactgacaccaaactcaaacagatcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccttttttgtatcagaacacatcctgcagttactgacaccaaactcaaacagatcatg 624

                                                                       
Query: 425 tagacctccaatcttccttttcccagctcattccacccagcttccaacatcatcagtaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagacctccaatcttccttttcccagctcattccacccagcttccaacatcatcagtaat 684

                                                                       
Query: 485 tctctgggattctgcaggttactcttgcctggaaagaagataaactaattgagaatcttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctctgggattctgcaggttactcttgcctggaaagaagataaactaattgagaatcttc 744

                                                                       
Query: 545 aaggctctctcatttccactctccttttcaccaaatccaattctccagtctcactcccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaggctctctcatttccactctccttttcaccaaatccaattctccagtctcactcccat 804

                 
Query: 605 ttctgt 610
           ||||||
Sbjct: 805 ttctgt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no099_m22.g1 MSMg01no099_m22.g1 CHROMAT_FILE:
MSMg01no099_m22.g1 PHD_FILE: MSMg01no099_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:27 2005
         (439 letters)



>mm_chr17_37971977_37972815
          Length = 839

 Score =  818 bits (423), Expect = 0.0
 Identities = 435/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcacagttgagaagatctgagtataggagaagactatggctattaaacagacaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcatcacagttgagaagatctgagtataggagaagactatggctattaaacagacaaagg 580

                                                                       
Query: 61  ctgtgaatgttgtaaatgcagccactgcaatctcattaatgaattcataagaacaagcta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctgtggatgttgtaaatgcagccactgcaatctcattaatgaattcataagaacaagcta 520

                                                                       
Query: 121 gttttagcatttggggaatgtcacagaagaactggtgaataattctcttcccacaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gttttagcatttggggaatgtcacagaagaactggtgaataattctcttcccacaaagag 460

                                                                       
Query: 181 gaattgagaaattaacgcctgtgtgtaggagcccagatagtcctccagccatccatacag 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattgagaaattaacacctgtgtgtaggagcccagatagtcctccagccatccatacag 400

                                                                       
Query: 241 ctatcactgctcacttgcaggcatggggatccataattgtctcatactgcagtggccgac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctatcactgcacacttgcaggcatggggatccataattgtctcatactgcagtggccgac 340

                                                                       
Query: 301 agatggcaacataccggtcataagacatcactgtgagaatagctacttctgatgaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agatggcaacataccggtcataagacatcactgtgagaatagctacttctgatgaggcca 280

                                                                       
Query: 361 gagctatgaagaagaaaacctgaagcatacactgaccaagagaaatgaaaccattgtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagctatgaagaagaaaacctgaagcatacactgaccaagagaaatgaaaccattgtcca 220

                              
Query: 421 tgagtgagcttgcaataga 439
           |||||||| ||||||||||
Sbjct: 219 tgagtgagtttgcaataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)