Query= MSMg01no099_n11.b1 MSMg01no099_n11.b1 CHROMAT_FILE:
MSMg01no099_n11.b1 PHD_FILE: MSMg01no099_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:30 2005
(276 letters)
>mm_chr17_35790654_35791330
Length = 677
Score = 426 bits (220), Expect = e-123
Identities = 261/280 (93%), Gaps = 11/280 (3%)
Strand = Plus / Minus
Query: 5 gaattcccttgcctacctaaaatccaccactcaaaaaacaaaatgggagtagaggttcca 64
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 552 gaattcccttgcctatataaaatccaccactcaaaaaccaaaacgggagtagaggttcca 493
Query: 65 tttaaactttt-------cccccctagaatttataatctgaaagcaagccagcactcagg 117
||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttaaac---tccccccccccccctagaatttataatctgaaagcaagccagcactcagg 436
Query: 118 gtgaattatttaccacaggtgcctgtgatccagaggatgtagaaggctcttttctccttt 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 435 gtgaattatttaccacaggtgcctgtgatccagaggatgtagaaggctcttttctcctct 376
Query: 178 gcctatttgtgtcatagcaactggcaactaaaaacaatggggcagaaatgaaaccacaca 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcttatttgtgtcatagcaactggcaactaaaaacaatggggcagaaatgaaaccacaca 316
Query: 238 gcaaagaggaaaaaaaaga-gagagagaaaaataggcatg 276
||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 315 gcaaagatgaaaaaaaaaaagagagagaaaaataggcatg 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no099_n11.g1 MSMg01no099_n11.g1 CHROMAT_FILE:
MSMg01no099_n11.g1 PHD_FILE: MSMg01no099_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:30 2005
(248 letters)
>mm_chr17_35669422_35670068
Length = 647
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 1 cttagatgtcactgcctgggaagttcccagtgactgactgaggtgacatgccagagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagatgtcactgcctgggaagttcccagtgactgactgaggtgacatgccagagagca 260
Query: 61 tggtccagaggggagtgggggggacggagctccgaggctgagatgccagtctagagggtg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtccagaggggagtgggggg-acggagctccgaggctgagatgccagtctagagggtg 319
Query: 121 ctttctgacccaggcgtcccgcctctgcctctaattaccaagcttccccacgcgaggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttctgacccaggcgtcccgcctctgcctctaattaccaagcttccccacgcgaggttt 379
Query: 181 gcccccattttgtggcttccaataactatcacggatgaaaggtagccttccttgtgatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcccccattttgtggcttccaataactatcacggatgaaaggtagccttccttgtgatta 439
Query: 241 taaagatg 248
||||||||
Sbjct: 440 taaagatg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space: 152482
Effective search space used: 152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
