Query= MSMg01no100_i03.b1 MSMg01no100_i03.b1 CHROMAT_FILE:
MSMg01no100_i03.b1 PHD_FILE: MSMg01no100_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:23 2005
(405 letters)
>mm_chr17_27304227_27305030
Length = 804
Score = 737 bits (381), Expect = 0.0
Identities = 396/401 (98%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 5 gaattctctttcctcccttctcctgctcccccaaattttccccttcttcctagtccctgc 64
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 707 gaattctctttcctaccttctcctactcccccaaattttccccttcttcctagtccctgc 648
Query: 65 ccaccttcctcgtctttcctctctcctctttcccctccctcccagacccctggccccact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccaccttcctcgtctttcctctctcctctttcccctccctcccagacccctggccccact 588
Query: 125 ccagagctgtggatacacagctgacagctgggcattcaggcctagagggtcaggtggttt 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccagagctgtggatac-cagctgacagctgggcattcaggcctagagggtcaggtggttt 529
Query: 185 cccttacccaggccactgacagcctagatctggacgggaaactccacccgggccccagtg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 cccttacccaggccactgacagcctagatctggacgggaaactccacccgggccccagcg 469
Query: 245 ggagaactgagctgggccagaccttttcctgtgcttgcagacagaggagggcactgagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggagaactgagctgggccagaccttttcctgtgcttgcagacagaggagggcactgagag 409
Query: 305 acaagagcccctactgcgcactccctgataccccccagaaagaggctctggtgagtgcaa 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acaagagcccctactgcacactccctgataccccccagaaagaggctctggtgagtgcaa 349
Query: 365 ccttgatgtaggatggggaagaaccatcttactgagccctg 405
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccttgatgtaggatggggaagaaccatcttactgagccctg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space: 314820
Effective search space used: 314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_i03.g1 MSMg01no100_i03.g1 CHROMAT_FILE:
MSMg01no100_i03.g1 PHD_FILE: MSMg01no100_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:23 2005
(359 letters)
>mm_chr17_27127363_27128121
Length = 759
Score = 679 bits (351), Expect = 0.0
Identities = 357/359 (99%)
Strand = Plus / Plus
Query: 1 actgtgtagaccaggcttgcctcatattcacatgggtccacctgcctctgccccctgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgtagaccaggcttgcctcatattcacatgggtccacctgcctctgccccctgaat 260
Query: 61 gctgtgattaaaagcctgggccctgtgtgctttctgagctcagattatgagcttgtgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgattaaaagcctgggccctgtgtgctttctgagctcagattatgagcttgtgttg 320
Query: 121 atgaccttgggacagactgtcttaggctattacagggttctgttggcttcatttttatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaccttgggacagactgtcttaggctattacagggttctgttggcttcatttttatga 380
Query: 181 gtgtgtgtcaagtctgttgagaaatgaaattacatggataagaatttgaagtaagataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtcaagtctgttgagaaatgaaattacatggataagaatttgaagtaagataag 440
Query: 241 caatgcctaagttatgtaagagacacttctgtgtctatagaagtccactggagcttcagg 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcctaagttatgtaagagacacttctgtgtctatagaagtccactggagcttcagg 500
Query: 301 gatgagctatcaaaccttcaggagccagcacaatacacggcaaaagacaccttaaggag 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gatgagctatcaaaccttcaggagccagcacaatacacggcaaaagataccttaaggag 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
