BAC Information

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BAC

Clone NameMSMg01-101A23
Chromosome17 (Build37)
Map Location 79,952,295 - 79,952,504
singlet/doubletsinglet
Overlap geneLOC639964
Upstream geneVit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101A23.T7 (MSMg01no101_a23.b1)MSMg01-101A23.TJ (MSMg01no101_a23.g1)
ACCAG316571AG316572
length745732
length of high quality
(start - end)
210 (156 - 365)---
definitionCHROMAT_FILE: MSMg01no101_a23.b1 PHD_FILE: MSMg01no101_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:08 2005CHROMAT_FILE: MSMg01no101_a23.g1 PHD_FILE: MSMg01no101_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGTTTTTTGNNNGGNGGGGGGGTTTTTCCCCCCCNNNNCNAGAATCANN
NACATCTAAATTTGCGCCGCTAATAGATATTATTCCAGAGAGGGGGNGGA
ATTANTAAGTACCANTAAGGGGGTTNNTNNGTAAGGGAAAGATANAANCT
CNTANTTTTGGGTTATTCCCATAGATATAACTGCTTAATAGATAAAAGAC
TAAGTATTTGGTCTCACCTTGGAATGTTGAATAAGTTGTTCAAGGGTCTA
AGAACATCATGAACCAAGAGAGTTTGTGAAATTGATGTATGGATCTTAAA
TCCTATAAAATACTTTAAAAATAAAGCATTCAAATACTATTTAAGTCCCA
AGGAACTCTATCCCTTTTTTTTTGCATCCTCTCACTGGCCTACACTTCCC
AGTTTTTTTTTTACCCCCCCCCCCCCCCAANAGTTTTTATTACAGTTGGT
TTCATTCTTATAATATGCATGAAAACATACACCTATGTTGCGGAGATCCA
TGTGACAGCATTCACTGACAGACAGCTGGCATCCTAGCCAACATTTTCAT
CTCTTAGTTTTTCTTATTAGAATTTCATATTCCTCTTTAGGTGTGACTAG
ATCTGTTTTTCTCATGATAGCCCTGAGACCCCCATCTACTACTGAAATCA
ATTCACTTTCACACCTGAAAGTCTCAACGTTCCCAATTTTCACCCTTTTT
TTTGAATCCCAGCTCCCTTTCACATATGACAAGAATGGTCTTCTC
TGAAGGTGTGGGGGGGGGGGGGGGGAGGGGTGGGTGCTGGAAANCCCGGA
AAGAATTATGTATGCTATGGGTAGCCTGGAGGGAGCTTGTTCCAGAAATT
TAGGTGACCTATAGAATTTCCCCGGAAGGGGTTACGTCTCCTGTTTATTT
TCTCAGGAATTGGGGATGGGGCGCCCGTGTCAGAGTTTGTTTAGAGACGA
TCTTGTATCTTTTAGTGGTATGAAGGTTAGAAGGGTTAGGATGGTGAAAG
TGGTATTTTGTGTTAAAAAAAGCTTTGGTTGGTATAAAAGATTTTGGAAA
GGAATTTGGAGGTTTAAAAGATTTAAGAAGGGTTATAGGTTTTTTGTTAG
GGTGAAGTAGGTAAGTTTTGTTATAAATTATTTTGGAAGTAAAATTTTTT
TTTTTTTTTCTATGTTTATTATGGGTTTTAAAAAAAAGTTATTTTTTTTT
TTAATCATACCACTTAAATAAATTCTTTGGGTTATATGGGTGATAATTTT
TTTTTTATTAAATGTGGATTATAAATTAAAATACTTTAGGGTGTGGGGAG
TATTGTCTTATTATGTTTTTGTAAGGGGGTTTCTTACAACTTGTCGGTGA
TAAACTGGTTATTTGTGTAGAGGAGGGGGGGTGTGTAGGTGTTGCGGTTT
GCGGGGCGGCCTCTTTTTTCTGTGTTGAGTGTTTTTGTTTTTTTTTTTTT
TTTGTGGGTTTTTCTGTTTTATTTTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_a23.b1 MSMg01no101_a23.b1 CHROMAT_FILE:
MSMg01no101_a23.b1 PHD_FILE: MSMg01no101_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:08 2005
         (210 letters)



>mm_chr17_79952095_79952708
          Length = 614

 Score =  329 bits (170), Expect = 9e-95
 Identities = 199/210 (94%), Gaps = 4/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgggttattcccatagatat---aactgcttaatagataaaagactaagtatttggt 57
           ||||||||||||   ||||||||   |||||||| |||||||||||||||||||||||||
Sbjct: 201 ttttgggttatttagatagatataacaactgcttgatagataaaagactaagtatttggt 260

                                                                       
Query: 58  ctcaccttggaatgttgaataagttgttcaagggtctaagaacatcatgaaccaagagag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccttggaatgttgaataagttgttcaagggtctaagaacatcatgaaccaagagag 320

                                                                       
Query: 118 tttgtgaaattgatgtatggatcttaaatcctataaaatactttaaaaataaagcattca 177
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 321 tttgtgaaattgatgtatggatctcaaatcctataaaatactttaaaaataaagcatcca 380

                                         
Query: 178 aa-tactatttaagtcccaaggaactctat 206
           || ||||||||||||||| |||||||||||
Sbjct: 381 aaatactatttaagtccccaggaactctat 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 614
Length adjustment: 9
Effective length of query: 201
Effective length of database: 605
Effective search space:   121605
Effective search space used:   121605
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)