Query= MSMg01no101_m01.b1 MSMg01no101_m01.b1 CHROMAT_FILE:
MSMg01no101_m01.b1 PHD_FILE: MSMg01no101_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:05 2005
(666 letters)
>mm_chr17_31418178_31419243
Length = 1066
Score = 804 bits (416), Expect = 0.0
Identities = 435/442 (98%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 5 gaattcctggcttgcaaggtccaaaacgctaacattcattctcacatacttgattacatt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattcctggcttgtaaggtccaaaacgctaacattcattctcacatacttgattacatt 383
Query: 65 tccatttcagttcttaacatttaaaatatgttttcactatagaaataagacatgcgcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccatttcagttcttaacatttaaaatatgttttcactatagaaataagacatgcgcaat 323
Query: 125 ggaaacatgtggacacttccaaaaatacagacacagtcatgtccccctgatatcttcacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaaacatgtggacacttccaaaaatacagacacagtcatgtccccctgatatcttcacg 263
Query: 185 cccagctttttcctcactagagaagctgctaacgtgtttataatcttttcatcttcggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cccagctttttcctcactagagaagctgctaacgtgtttataatcttttcatcttcggaa 203
Query: 245 gtaaacaaacaaacaaacaaaaaacccaagccgggtggtggtggtgcacgcctttactct 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 gtaaacaaacaaacaaacaaaaaacccaagccgggtggtggtggtgcacgcctttaatct 143
Query: 305 cagcacttgggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cagcacttgggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaga 83
Query: 365 gtgagttccaggacatccagggctgtacagagaaaccctgcctcaaaaaacaaaacaaaa 424
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 82 gtgagttccaggacatccagggctacacagagaaaccctgcctcaaaaaacaaaacaaaa 23
Query: 425 caaaaaacaaaaaa--aaaccc 444
||||||||||||| ||||||
Sbjct: 22 gaaaaaacaaaaaacaaaaccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_m01.g1 MSMg01no101_m01.g1 CHROMAT_FILE:
MSMg01no101_m01.g1 PHD_FILE: MSMg01no101_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:05 2005
(385 letters)
>mm_chr17_31414543_31415327
Length = 785
Score = 737 bits (381), Expect = 0.0
Identities = 384/385 (99%)
Strand = Plus / Plus
Query: 1 tgaccactcaaactcatgctcactgacccgggtcagggtttaacatctcaaaccaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaccactcaaactcatgctcactgacccgggtcagggtttaacatctcaaaccaattca 260
Query: 61 ggttacttttgagctttctctcgcaaagaacccacattcattctgctctgtcttctggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttacttttgagctttctctcgcaaagaacccacattcattctgctctgtcttctggtg 320
Query: 121 cctgtgggcttcctctcaaaggcccagcctgtcatgccacgcatacagacccactcagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtgggcttcctctcaaaggcccagcctgtcatgccacgcatacagacccactcagac 380
Query: 181 ccacttattcacactgactgtctcttacagataggtccctccagtgccacattctaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacttattcacactgactgtctcttacagataggtccctccagtgccacattctaccct 440
Query: 241 gcaaggtccctctgggtcccctcccacccctatactgtcatcccaggctcagaccttcct 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggcccctctgggtcccctcccacccctatactgtcatcccaggctcagaccttcct 500
Query: 301 gctaagctagactttctgtcccggtatctggcctcctacccgtctcacagttttcctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaagctagactttctgtcccggtatctggcctcctacccgtctcacagttttcctctg 560
Query: 361 tgcagaaacccaagcacacacaggc 385
|||||||||||||||||||||||||
Sbjct: 561 tgcagaaacccaagcacacacaggc 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
