BAC Information

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BAC

Clone NameMSMg01-101N20
Chromosome17 (Build37)
Map Location 27,362,681 - 27,362,827
singlet/doubletsinglet
Overlap genenone
Upstream geneItfg3, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
Downstream geneLOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N20.T7 (MSMg01no101_n20.b1)MSMg01-101N20.TJ (MSMg01no101_n20.g1)
ACCAG317163AG317164
length732806
length of high quality
(start - end)
249 (78 - 326)149 (75 - 223)
definitionCHROMAT_FILE: MSMg01no101_n20.b1 PHD_FILE: MSMg01no101_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:14 2005CHROMAT_FILE: MSMg01no101_n20.g1 PHD_FILE: MSMg01no101_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATGGGCGGA
ATTCAAGGCCAGCTTATCATACAGAGTGAGTTCTAACCTACAGAGGTGGC
ACAGAACCCTGGAGCAGAGACAAGGACGCAGTCTCTGAGTTTGAGGTCAG
CTTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACC
AGTGGGACAAAAATGGGGTCCCATGTCTGCTCAGGGCTAGGGCCGCTGGG
TGAGGTGGACTCCAAGAGTTTGACTGTGCACATCCCATGGTACCTCAGCG
CAGGTGTTGGCCTGTGGGAAGCTGGATTATTTCACTCCAGGGGTGAGGAA
GGCACAGTCTGGGGTCCTCGAGGAACTGCTGGAGATGGGCTCCAACTCTT
AGGCACCAGATGCTGCTGGGTACCATGGAAGAGCCGGTTCTGGGGTCCCC
AGGCCTGCATGGAGGCCAGGGACGACAGGTTCTCACTCTTGGACATCCCA
GATGCTCCTGTATGTCTTGGAAGAGTTGAGAACAGTGGGGACCCTCGGGC
AGACTCTGGCCCTGGCCGAAGGGAAAAGGGCAGGGAGGAGAGCGCTCTGG
CAGGTTACTGCAGGGATGAAAGTCCTTAGCTGGTTCCGTGGGGGTTTGGT
TTGGTGGCTTGGGTTGGTGGCAGCTGGCAGCTGTGGCTGAGAGCTCAGGA
GGTCTCCTGCGCAGGAATTTAGATGCCCGGCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCGNAAACTCGGGGGCCCCAGGGGACACTGTCTATGGT
GACCTGTGTGACTCTAGATCTTCTCTTCTCTTGTTATTTCCAGAGCTCAC
AAATGATTCAGAGTACAGCCACCACCACCAGAACCCCATGGCAGGAGACA
GGGAGGGAGGGAGGGAGGGAGGGAGATAGTTATTCTCTCCCCTCATTTCT
AAACCTTTTTGTAATATTTTTCCTGCCGTTTACTTCCTCTTTTCTATCTG
TTCTCTGCTATTTACTTACTTTTTTTTTTTTTCCATTACGTCATTCTGGT
GGTCCTATTTGTATTTTTTTTCCCTCCCCCCCCACCCATTATCTTTATTT
CTTTCTCTCTATTCTGTTTCCCCCTCCACTCCTTTATATATTTTTACTCC
TCCGTTGTCTGCGCTTTTCTCCACTCTCGTCCCTACTCGTATCACCTTAC
GTTCTACCCTTTCATGGAAATATTACCCTTTCACGATCTTTATCTTATCT
TACCGACCCCGCACTTATTTTCTCTCATCGTGTCTCTCTTTCTATCTCTC
CCCTTCTAAACGTTCTCTTACGATTCTGCCTCTTATTCTTTCGTTGTTGT
TCTTCCTATTTGCCTATAACTCATGTTCCTTTTACTTCCCCTTATCGTGT
CTAATATATAATCCTGCTCTCGTCCCGTCATTTTATCACATATACTTTAA
TCGACATGTACTCGCCGCTTCTGCGCTCGACTCTTGATAACTTGTTGGTG
TAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n20.g1 MSMg01no101_n20.g1 CHROMAT_FILE:
MSMg01no101_n20.g1 PHD_FILE: MSMg01no101_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:15 2005
         (149 letters)



>mm_chr17_27362479_27363027
          Length = 549

 Score =  284 bits (147), Expect = 1e-81
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gccccaggggacactgtctatggtgacctgtgtgactctagatcttctcttctcttgtta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gccccaggggacactgtctatggtgacctgtgtgactctagatcttctcttctcttgtta 262

                                                                       
Query: 63  tttccagagctcacaaatgattcagagtacagccaccaccaccagaaccccatggcagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttccagagctcacaaatgattcagagtacagccaccaccaccagaaccccatggcagga 322

                                      
Query: 123 gacagggagggagggagggagggaggg 149
           |||||||||||||||||||||||||||
Sbjct: 323 gacagggagggagggagggagggaggg 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)