Query= MSMg01no101_o24.b1 MSMg01no101_o24.b1 CHROMAT_FILE:
MSMg01no101_o24.b1 PHD_FILE: MSMg01no101_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:21 2005
(489 letters)
>mm_chr17_76219553_76220442
Length = 890
Score = 878 bits (454), Expect = 0.0
Identities = 479/488 (98%), Gaps = 3/488 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctagtcttccc--gtatatttaccaggaaactgggtctatagacatgatgctg 61
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaattcctagtc-tcccaggtatatttaccaggaaactgggtctatagacatgatgctg 558
Query: 62 agaatgactttgtctcctttgaaaacttgctgagcaagcactcttgagggtagagaggag 121
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaatgactttgtctcctttgcaaacttgctgagcaagcactcttgagggtagagaggag 498
Query: 122 agccaagctcattacagaggagaatggaaacaacccacagctaatgatgaaagtaatgag 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 497 aggcaagctcattacagaggagaatggaaacaacccacagctaatgatgaaagtagtaag 438
Query: 182 ttacaaagtcacttccctgtcatttccatcaagtataaagcaggataaagttgatctttg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttacaaagtcacttccctgtcatttccatcaagtataaagcaggataaagttgatctttg 378
Query: 242 aggccctctcaagctcttaaagtccttaatctgtggagagtagctatatctatcagaaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggccctctcaagctcttaaagtccttaatctgtggagagtagctatatctatcagaaca 318
Query: 302 tataatgtcacaaaatcttcttgactacagaccataatttctgttgtactaacacagatc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tataatgtcacaaaatcttcttgactacagaccataatttctgttgtactaacacagatc 258
Query: 362 tgctataccttaaacacgggattttaaaagaagggcagagaatacacactacgaactggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgctataccttaaacacgggattttaaaagaagggcagagaatacacactacgaactggg 198
Query: 422 aagccacaagaggcccattggacacgcaaactttatatgccccagtacaggggaatgcca 481
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aagccaggagaggcccattggacacgcaaactttatatgccccagtacaggggaatgcca 138
Query: 482 gggccaaa 489
||||||||
Sbjct: 137 gggccaaa 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_o24.g1 MSMg01no101_o24.g1 CHROMAT_FILE:
MSMg01no101_o24.g1 PHD_FILE: MSMg01no101_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:21 2005
(532 letters)
>mm_chr17_76144004_76144935
Length = 932
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%)
Strand = Plus / Plus
Query: 1 atcattgaatcaataaatgtggtgattaaaagtcttgaagagtcaaaatttctcaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcattgaatcaataaatgtggtgattaaaagtcttgaagagtcaaaatttctcaattat 260
Query: 61 ggcatattttgaatggtaaactttcaaagagaagaacaaatattaatactattggtggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatattttgaatggtaaactttcaaagagaagaacaaatattaatactattggtggat 320
Query: 121 aaaaatatatttatctatttgtggattttgatgtgtttctcttttgcttctgcaaaggat 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatatatttatctatttgtggagtttgatgtgtttctcttttgcttctgcaaaggat 380
Query: 181 ttgggaattttcaaatgagattccgttaaataaaaaaagagaacatttaaccacacagct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggaattttcaaacgagattccgttaaataaaaaaagagaacatttaaccacacagct 440
Query: 241 ggagagaaatgaatgtgacaagataaaagttaatattattttaacaatcagaaaattaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagaaatgaatgtgacaagataaaagttaatattattttaacaatcagaaaattaaa 500
Query: 301 gtgcatttaggctgccctacacccctgagaaaacaaaatgggggtgtgtgaataagatga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcatttaggctgccctacacccctgagaaaacaaaatgggggtgtgtgaataagatga 560
Query: 361 agcattgtagaatttgacattaactcttgaatcatctaagatatttctttgattcaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcattgtagaatttgacattaactcttgaatcatctaagatatttctttgattcaatgt 620
Query: 421 ggtgagaatttattgccccctagtgaaataactgggtctagggatagaattaacaattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgagaatttattgccccctagtgaaataactgggtctagggatagaattaacaattat 680
Query: 481 cagaagaattaaaaaattcatcatatacctaattagggttttatcatcttca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaagaattaaaaaattcatcatatacctaattagggttttatcatcttca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
