BAC Information

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BAC

Clone NameMSMg01-102A16
Chromosome17 (Build37)
Map Location 22,762,748 - 22,762,931
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A16.T7 (MSMg01no102_a16.b1)MSMg01-102A16.TJ (MSMg01no102_a16.g1)
ACCAG317295AG317296
length708711
length of high quality
(start - end)
229 (81 - 309)184 (121 - 304)
definitionCHROMAT_FILE: MSMg01no102_a16.b1 PHD_FILE: MSMg01no102_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:30 2005CHROMAT_FILE: MSMg01no102_a16.g1 PHD_FILE: MSMg01no102_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTGCTAGAAGAGGGCGGAATTATAT
AGGTTACCAACCTTACAAATGTAGTGAATGTGGAAAATACTTTACCCAAA
AAGGGAGTCTTATTACCTCTCAGAGAATTCATACTGGAGAGAAACCTTAC
AAATGTAGTGAATGTGACAAATGCTTTACCCAAAAATGCAGTCTTATTTT
TCATCAGAGAGTTCATACAGGAGAGAATCCTCACAAATGTAGTGAATGTG
GCAAATGCTTCACCCTCAAAAGTGATCTTAGAGTTCATCAGAGAATTCAC
ACAGGAGAGAAATCTTATTAATGTAATGAATGTGACACGTCTTTTATCAA
GAAATCCAATCTTAGAAGACATCAGAGAATTCATACAGGAGAGAAACCTT
ACAAATGCAACGAATGTGAAAAATCCTTTACCCACAAATGCAGTCTTAGC
ATTCATCAGAGAACTCATACAGGAGAAAGACCTTACAAGCGTAGTGAATG
TGACAAACGCTTTACCAACAAAGGTTACCTTGTAAGCCATCATACGAATC
ATACAGGAGAGAAACCTTACAAATGTGATGAATGTGACCAATGTTTTACC
CACAAATGCCCTCTTATTATTCCTCAGAGATTTCATACAGAATACTATCC
TTATATTTGTATTGCATGTCGTAAATTTTTTACCCCAAATAGTAGTCTTC
CCCCTCCC
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXNAAAAATGGGTTTATATAGGGAAAAATTGCAAGCAGGGTCT
TCCAGTCCTTGTTGTCCAATGATTAGGGTAGAGGAAAATTGGNCTTTAAA
CTGATGGGTACATAGCATCTGTTCAAACCACAAGGAGAGACCGCACATCT
AGCAGGGACATCTTGACCTGGGAACAATTCATCTTTTCTTACATCATCCT
GTTATTGTGACCAGATTATCCTGTTATTGTGAGCTGGCCACAGCTGTTAT
GTTGTATTTTCATCTGTTGAGAACACTTTGTGGTCTTTTTCTCAGAGGCA
ATCATTGTTTCTACGCCCCTCTGAAGATAAGTAACTCAAATGTCAAAATC
TTGCATAAACAGAGTCTCCTGAATTCAAATATCTCTAGATAATTTCTATC
AGGTGTTTTTACCATGAATGTCGCAAATACCAGCTTCCGGTCTGGCCCTT
TACAGCTTGAAAATTCCACCTTCTACTTATGAGATATGACCCTCTACCTC
CATATCCTACAACTATGGATTCCCAAGTGGAAACTAGGCATTATTGGTAT
ACTTTTCTGTCACTTTAACCCTCCTATCCCCCCCCGGTAATCATTAATAT
CCTTAGAAATCATCTAACCCCAAGGCAGGACCTTTGCCCCCCTCGTATAC
CCTTCCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a16.g1 MSMg01no102_a16.g1 CHROMAT_FILE:
MSMg01no102_a16.g1 PHD_FILE: MSMg01no102_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:30 2005
         (184 letters)



>mm_chr17_22762548_22763131
          Length = 584

 Score =  327 bits (169), Expect = 3e-94
 Identities = 180/184 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggtagaggaaaattggnctttaaactgatgggtacatagcatctgttcaaacca 60
           |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gatttgggtagaggaaaattggcctttaaactgatgggtacatagcatctgttcaaacta 260

                                                                       
Query: 61  caaggagagaccgcacatctagcagggacatcttgacctgggaacaattcatcttttctt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggagagaccacacatctagcagggacatcttgacctgggaacaattcatcttttctt 320

                                                                       
Query: 121 acatcatcctgttattgtgaccagattatcctgttattgtgagctggccacagctgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcatcctgttattgtgaccagattatcctgttattgtgagctggccacagctgttat 380

               
Query: 181 gttg 184
           ||||
Sbjct: 381 gttg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)