BAC Information

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BAC

Clone NameMSMg01-102H21
Chromosome17 (Build37)
Map Location 75,465,571 - 75,465,805
singlet/doubletsinglet
Overlap geneLtbp1
Upstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
Downstream geneEG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102H21.T7 (MSMg01no102_h21.b1)MSMg01-102H21.TJ (MSMg01no102_h21.g1)
ACCAG317620AG317621
length703775
length of high quality
(start - end)
235 (72 - 306)299 (123 - 421)
definitionCHROMAT_FILE: MSMg01no102_h21.b1 PHD_FILE: MSMg01no102_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:06 2005CHROMAT_FILE: MSMg01no102_h21.g1 PHD_FILE: MSMg01no102_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXATATTCCGAGAGAGGGCGGAATT
CTTAAATTTTTCCTCCACAATCAGGCAGCTATGTTTACTGTTCCCTCCCA
AGTCTGATCCCTTATAATCCTAGCCGCACTATGGTTACTTAGGGTAAAGT
CATTCATCAAGTCAGTATCTTTAAGGCTCTTGATACGTGAGTCTAACATG
GAGGCCCTGAGGAAGGAAGAAGGATACTATGGTACAAGAGATCTCTGTAA
ACGTGTTACGGAGGGTGGCTTAAAGCAGCATGTTCAAGAGTAGCTAAGGA
GCATCTAGACCAGAAGGAAGTTGAAAACACTCACTGAGGATGTATCTGCT
GGGAGAGTCCCATTGATGGCTTTGGCTTGAGGGTCAAGGTCATCTGGGCC
ACTGGACTGACCCTGGGCAAGGTGTCTGCTCTTCTTGGTTGACGTATGTT
TTGCTGCTTGCTCCATGGGGGCCCACGAAGACCCATGATTCTGTCCTCTC
AAGGCTGCCGTCACGGTGTCCTGTGAAGATGTGATCTCGTACGCTTTGCC
CTTTGACCCTGGCTTGCCCATATCGAGCTGAAGTCGCACACACATCCCTC
CGTCCTGGGCTTGGCGGATCACAACTGTCTTGCATAAATACACTCATCGA
TCCGGCTTTCGCAGTAAACCCCATTTCTACTTACCCCCTTTCTCCTTAAG
GTT
TGTTTTTTTTTTTNGTTTGTCTTCTCTTCTTCCTTTCTTCAATATATNNN
NATCGATGCAGTGGGAGGCCTGGCGGCGCCTGGTCCCAAAAGGGGGGTGA
CCTATAGAATTTTCCGCGAAATTCCTGAGAGGAAAACTCATAGCTCTGAG
TGCCTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAGCAC
ACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTTACCCAAGAGGAGTAGA
CAGCAGGAAAAAATCAAACTCAGGGGTGAAATCAACCCAGGGGAAACAAA
AAGAACTATTCAAAGAATCAACCAAACCAGGAGCTGGTTCTTTAAGAAAA
TCAACAAGATAAGTAAACCCTTAGCCTGACTCACTAGAGGGCACAGGGGC
AGCATCCTAATTAATAAAATCAGAAATGAAAAGGGAGACATAACAACATA
TCCTGAGGAAATCCAAAACACCATCAGATTCTTCTACAAAAGGTTATACT
CCACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTAGACAGATAC
CAGGTACCAAAGTTAAATCAGGATGAGAATAATGACCTAAACAGTCCTAT
ATCCCCTAAAGAAATAGAAACAGCCATTAGTAGTCTCCCAACCAACAAAA
GCCCAGGATCAGATGGTTTTAGTGCAAAGTTCTATCAGATCTTCAAAGAA
GATCTAATTTCCAGTTCTGCACAAACTATGCCACAAAATAGAATAAGAAG
GGACCCTTACCCTATTCATTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_h21.b1 MSMg01no102_h21.b1 CHROMAT_FILE:
MSMg01no102_h21.b1 PHD_FILE: MSMg01no102_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:06 2005
         (235 letters)



>mm_chr17_75465371_75466005
          Length = 635

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcagctatgtttactgttccctcccaagtctgatcccttataatcctagccgcacta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 caggcagctatgtttactgttccctcccaagtctgatcccttataatcttagccgcacta 376

                                                                       
Query: 61  tggttacttagggtaaagtcattcatcaagtcagtatctttaaggctcttgatacgtgag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 tggttacttagggtaaagtcattcgtcaagtcagtatctttaaggctcttgatacgtgag 316

                                                                       
Query: 121 tctaacatggaggccctgaggaaggaagaaggatactatggtacaagagatctctgtaaa 180
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctaacatggaggcgctgaagaaggaagaaggatactatggtacaagagatctctgtaaa 256

                                                                  
Query: 181 cgtgttacggagggtggcttaaagcagcatgttcaagagtagctaaggagcatct 235
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catgttacggagggtggcttaaagcagcatgttcaagagtagctaaggagcatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)