BAC Information

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BAC

Clone NameMSMg01-102J09
Chromosome17 (Build37)
Map Location 22,768,016 - 22,768,259
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J09.T7 (MSMg01no102_j09.b1)MSMg01-102J09.TJ (MSMg01no102_j09.g1)
ACCAG317688AG317689
length679943
length of high quality
(start - end)
244 (74 - 317)48 (143 - 190)
definitionCHROMAT_FILE: MSMg01no102_j09.b1 PHD_FILE: MSMg01no102_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:13 2005CHROMAT_FILE: MSMg01no102_j09.g1 PHD_FILE: MSMg01no102_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGGCG
CGGAATTCTAGATGTTTCACTAGGCACTATTGATAACCTCTTCTGTCACT
TCAACTCTAGACATCCAGTGGGCACAATTAATATTTCCAGAGAATATATA
TATCCCAACTATCCAATCCTTGGAGATTACAGAAGTAGAAGAGGTAACTG
AACTCCCCTAAAGGGACCTTGCCTTTTTGACATCCCCTCTCTTAAATACA
AACCTGTCTTTTCATCTCTAGCTTTATACTCTAACATTGGTCAACAGGGC
TCTTAATGCCACCCATACTGTTTTTTTTGGAGCTTGTTACCTCCTGGGAC
ACAAAAGTGCATTTGTGCACATTAACACTTCTCCTGTGACTCTAGGAAAT
AATCTCATGACCCTGGCATTGCCAGGATTCCCTACTCTTTTAGAATTTCA
CCTCTTTTATAATGCACTATCTTTTTATCACCTCTGACTCTTATTACGTC
CCTGCGTCTAACTCTCCACTCCGACCCTCTTCTTAATTCTAGGCTTCCCA
CCTCATCCCCCATTATTTAACTTCTTTACCACTGTGCGTTCTTCGAGCTA
CCCTTATCCTCTTATTACACCCCCTCCCAACTGTCCTGCCGCATTCCATT
CTTCTCCCACCTCCCCTCATGACCATTCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCNNNN
NCCCCTTAATAAANGGGTTCAATGCTGTGGGAGGCCTGGAGAACGCCTGT
TCAAAACAAGGGAGGTGACACTATAGAATTTCCCGCAGGAATTCACACAG
GTAGAGAAACCTTACAAATGTAATAGAATGGTGACACGTTCTTCTTATCA
TAGAAATCCAATGCTTAGTAAGACATCAGTAGAATTCACTACAGTGTAGA
GAAACCGTTAGCAAATGTCAACGAATGTGTAAAAATCTCTTTACCCACAA
TTTGCAAGTCTATATCATCTCATTCGAGAGAAAGTCATAACAGTGATATA
AGTACCTTACTATGTGTACGTGATATGTAGACAACAAGCTTGTACCAAAC
AAAGGTGTACCTACGATAAGGGCATCTTTATTTAAACCAGACCGGCAAAA
GAACACCTTAACCACAAGAAGAATGCTTTGTTGACTTCACCGCTCTACCC
CTTCAAATGTTACCTTTTAGTATTTTTTCCCGCCACATTTCTTTCGAGAA
CCGTCATACATATCTACACTCTAAGTCAGAGTGTCGAATACCTTTCTTTC
AATCTACCATTTTAAAGCCCTACGCCATTCTATAACAATAAATCTCTTAC
AGACACGAGAAAATATTTGTTTTAAAGAAATGGTACAGATCCTCGATAAT
ACATTTATCCCAGAGTGTTAATCTCATTAATAGAAAACCAGAAGAAAGCC
TTCTCTTATAACTTGATATGTGTAATATCACCCACGATTTTCTCTTTCCG
CGAAAAATAATAACACCTTACAGGCCTTCTTCGGGGATTCGCTTCTTACT
GTTGTTGGTAATAATTCTTTCCTACCTTTTCTTGTCCCCTCCTAACTTAG
TAAAATTACCTGCCGGCGCCTATAGTTCTCTGGGACTTGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j09.b1 MSMg01no102_j09.b1 CHROMAT_FILE:
MSMg01no102_j09.b1 PHD_FILE: MSMg01no102_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:13 2005
         (244 letters)



>mm_chr17_22767816_22768461
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 239/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcactattgataacctcttctgtcacttcaactctagacatccagtgggcacaattaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcactattgataacctcttctgtcacttcaactctagacatccagtgggcacaattaata 260

                                                                       
Query: 61  tttccagaga--atatatatatcccaactatccaatccttggagattacagaagtagaag 118
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccagagaatatatatatatcccaactatccaatccttggagattacagaagtagaag 320

                                                                       
Query: 119 aggtaactgaactcccctaaagggaccttgcctttttgacatcccctctcttaaatacaa 178
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aggtaactgaactcccctaaagggactttgcctttttgacatcccctctcttaaatacaa 380

                                                                       
Query: 179 acctgtcttttcatctctagctttatactctaacattggtcaacagggctcttaatgcca 238
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gcctgtcttttcatctctagctttatactctaacattggtcaacagggttcttaatgcca 440

               
Query: 239 ccca 242
           ||||
Sbjct: 441 ccca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space:   149695
Effective search space used:   149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)